Galaxy |

Collect.shared (version 1.39.5.0)

shared - OTU Shared:

label - OTU Label filter:

groups - Groups filter (uses all groups if none are selected):

To filter: select select at least 2 groups

calc - Calculators (Uses defaults if none are selected):

freq - indicates when to output your data:

by default it is set to 100. But you can set it to a percentage of the number of sequence. For example freq=0.10, means 10%

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The collect.shared command generates collector's curves for calculators, which describe the similarity between communities or their shared richness. Collector's curves describe how richness or diversity change as you sample additional individuals. If a collector's curve becomes parallel to the x-axis, you can be reasonably confident that you have done a good job of sampling and can trust the last value in the curve. For calc parameter choices see: https://www.mothur.org/wiki/Calculators