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Customize the marker sequences and metadata (version 4.0.6+galaxy2)

Marker sequences:

Marker metadata:

Customization:

Sequences of the new markers:

Name of the new marker:

Length of the new marker:

Taxonomy of the genomes from which the new marker has been extracteds

Taxonomy of the genomes from which the new marker has been extracted 0

What it does

Customize the marker sequences (in fasta format) and metadata (in JSON) for a MetaPhlAn database:

Add marker
Remove markers
Keep markers

Inputs

MetaphlAn database (can be extracted with dedicated tool)

Fasta file with marker sequences
JSON file with marker metadata

The other inputs depends on the type of customization

Add marker
- Fasta file with the sequence of new marker
- Information about the new marker and related genomes
Remove markers
- File with list of markers to remove
Keep markers
- File with list of markers to keep

Outputs

Customized database (that can be used as input for MetaphlAn tool)

Fasta file with marker sequences
JSON file with marker metadata