Galaxy |

FROGSSTAT Phyloseq Structure Visualisation (version 3.1)

Phyloseq object (format rdata):

This is the result of FROGS Phyloseq Import Data Tool.

The beta diversity distance matrix file:

These file is the result of FROGS Phyloseq Beta Diversity tool.

Experiment variable:

The experiment variable that you want to analyse.

Ordination method:

Using phyloseq and customized R function, this tool constructs heatmap plot and ordination plot with the ordination methods to visualise data structure.

Input

data file (format rdata): The informations of data in one phyloseq object. This file is the result of "FROGS Phyloseq Import Data tool".

distance file (format tabular): The data file containing beta diversity distance matrix. This file is the result of "FROGS Phyloseq Beta Diversity tool".

Output

html file (format HTML):

The review of data structure with an ordination plot and with an heatmap plot:

/repository/static/images/ebf89eed93a25147/static%2Fimages%2Ffrogs_images%2Fphyloseq_plot_sample_ellipse.png

/repository/static/images/ebf89eed93a25147/static%2Fimages%2Ffrogs_images%2Fphyloseq_plot_heatmap_red.png

Contacts: frogs@inra.fr

Repository: https://github.com/geraldinepascal/FROGS website: http://frogs.toulouse.inra.fr/

Please cite the FROGS article: Escudie F., et al. Bioinformatics, 2018. FROGS: Find, Rapidly, OTUs with Galaxy Solution.