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Fastq.info (version 1.39.5.0)

fastq - Fastq Sequence file:

pacbio - if set to true, quality scores of 0 will results in a corresponding base of N:

format of sequence:

Use oligos file?:

a file that contain the sequences of the forward and reverse primers and barcodes and their sample identifier. Each line of the oligos file can start with the key words "forward", "reverse", and "barcode" or it can start with a "#" to tell mothur to ignore that line of the oligos file.

Output logfile?:

Mothur Overview

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki.

Command Documentation

The fastq.info command reads a fastq file and creates a fasta and quality file.