Galaxy |

gProfiler Orth (version 0.1.7+galaxy11)

Input is whitespace-separated list of genes, proteins, probes, term IDs or chromosomal regions.:

Source organism:

Common organisms:

Target organism:

Common organisms:

Numeric IDs treated as:

The prefix for fully numeric IDs. Check the “Resources” section below for the complete list of supported namespaces (including numeric). E.g., ENTREZGENE_ACC, WIKIGENE_ACC.

Maximum number of ortholog names per gene to show:

Shows all by default.

Filter N/A:

Whether to filter out results without a corresponding target name.

Tool settings

Tool settings 0

What it does

This tool wraps gprofiler2 R package which performs a request to g:Profiler g:Orth tool through its API.: g:Profiler g:Orth retrieves the genes of the target organism that are similar in sequence to the source organism genes in the input.

This tool is part of the g:Profiler from the University of Tartu.

Resources

gprofiler2 R tool

https://CRAN.R-project.org/package=gprofiler2 — as CRAN package.
https://anaconda.org/conda-forge/r-gprofiler2 — as conda-forge package.

Contact

By default the tool makes requests to APIs of the latest g:Profiler instance with the most recent data release. Please, use ’Tool Settings → Base URL’ to modify it in case you want to make use of older data versions. Also, if the results should be pinned for reproducibility, we suggest to modify the base url to the last archived data version.