Trinity assembles transcript sequences from Illumina RNA-Seq data. This tool performs some Quality Checks on a RNASeq experiment, analysing the abundance estimation for different samples using a transcriptome assembled with Trinity.

Inputs

This tool uses the matrix produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool.

You must describe your samples and replicates with a tabular file looking like this:

This file can be generated with the 'Describe samples and replicates' tool. The names in column 2 must match the names given in the tool 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity'.

Output

This tool will produce several PDF files, see the following page for more information: