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KAT sect (version 2.3.2)
Read type:
Single end read file(s):
Fasta file of targeted regions:
Kmer size:
The kmer length to use in the kmer hashes. Larger values will provide more discriminating power between kmers but at the expense of additional memory and lower coverage.
Fasta Count File:
Produce a fasta style representation of the input sequence file containing K-mer coverage counts mapped across each sequence
https://kat.readthedocs.io/en/latest/using.html#sect