What it does
This tool runs a remote blast against Uniprot/Swissprot database.
Dependencies
Bioperl is necessary for running this tool.
Required is a FASTA file containing protein sequences.
Generates an output text file.
BLASTP 2.2.29+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
RID: M2E3HVH4014
Query= C08B11.6 CE30856 WBGene00007434 actin status:Confirmed UniProt:Q09443 protein_id:CAA86667.3
Length=418
Score E
Sequences producing significant alignments: (Bits) Value
sp|Q09443.3|ARP6_CAEEL RecName: Full=Actin-like protein C08B11.6 853 0.0 sp|Q9D864.2|ARP6_MOUSE RecName: Full=Actin-related protein 6;... 280 2e-88 sp|Q9GZN1.1|ARP6_HUMAN RecName: Full=Actin-related protein 6;... 279 5e-88 sp|Q9DEE9.1|ARP6_CHICK RecName: Full=Actin-related protein 6;... 274 5e-86 sp|P45890.1|ARP6_DROME RecName: Full=Actin-related protein 6;... 265 1e-82 sp|Q6C982.1|ARP6_YARLI RecName: Full=Actin-like protein ARP6 232 4e-70 sp|O94241.1|ARP6_SCHPO RecName: Full=Actin-like protein arp6 228 2e-68 sp|Q7S6X6.1|ARP6_NEUCR RecName: Full=Actin-related protein 6 212 6e-62 sp|Q5NBI2.1|ARP6_ORYSJ RecName: Full=Actin-related protein 6 ... 210 3e-61
ALIGNMENTS >sp|Q09443.3|ARP6_CAEEL RecName: Full=Actin-like protein C08B11.6 Length=418
Score = 853 bits (2204), Expect = 0.0 Identities = 418/418 (100%), Positives = 418/418 (100%), Gaps = 0/418 (0%)
Sbjct 1 MSLTTIIFDNGGHNMKIGTIDSESPRLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV 60
Sbjct 61 RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF 120
Sbjct 121 TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL 180
Sbjct 181 TNKLKDWVSYRQLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD 240
Galaxy Wrapper Authors:
* Laura Entrambasaguas * Ginés Almagro * Fernando Pérez