Galaxy | Tool Preview

RemoteBlast (version 1.0.0)

What it does

This tool runs a remote blast against Uniprot/Swissprot database.

Dependencies

Bioperl is necessary for running this tool.

Input

Required is a FASTA file containing protein sequences.

Output

Generates an output text file.

Example Output

BLASTP 2.2.29+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: M2E3HVH4014

Database: Non-redundant UniProtKB/SwissProt sequences
457,803 sequences; 170,956,615 total letters

System Message: WARNING/2 (<string>, line 41)

Definition list ends without a blank line; unexpected unindent.

Query= C08B11.6 CE30856 WBGene00007434 actin status:Confirmed UniProt:Q09443 protein_id:CAA86667.3

Length=418

Score E

System Message: WARNING/2 (<string>, line 48)

Block quote ends without a blank line; unexpected unindent.

Sequences producing significant alignments: (Bits) Value

sp|Q09443.3|ARP6_CAEEL RecName: Full=Actin-like protein C08B11.6 853 0.0 sp|Q9D864.2|ARP6_MOUSE RecName: Full=Actin-related protein 6;... 280 2e-88 sp|Q9GZN1.1|ARP6_HUMAN RecName: Full=Actin-related protein 6;... 279 5e-88 sp|Q9DEE9.1|ARP6_CHICK RecName: Full=Actin-related protein 6;... 274 5e-86 sp|P45890.1|ARP6_DROME RecName: Full=Actin-related protein 6;... 265 1e-82 sp|Q6C982.1|ARP6_YARLI RecName: Full=Actin-like protein ARP6 232 4e-70 sp|O94241.1|ARP6_SCHPO RecName: Full=Actin-like protein arp6 228 2e-68 sp|Q7S6X6.1|ARP6_NEUCR RecName: Full=Actin-related protein 6 212 6e-62 sp|Q5NBI2.1|ARP6_ORYSJ RecName: Full=Actin-related protein 6 ... 210 3e-61

ALIGNMENTS >sp|Q09443.3|ARP6_CAEEL RecName: Full=Actin-like protein C08B11.6 Length=418

Score = 853 bits (2204), Expect = 0.0 Identities = 418/418 (100%), Positives = 418/418 (100%), Gaps = 0/418 (0%)
Query 1 MSLTTIIFDNGGHNMKIGTIDSESPRLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV 60
MSLTTIIFDNGGHNMKIGTIDSESPRLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV

System Message: WARNING/2 (<string>, line 69)

Definition list ends without a blank line; unexpected unindent.

Sbjct 1 MSLTTIIFDNGGHNMKIGTIDSESPRLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYV 60

Query 61 RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF 120
RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF

System Message: WARNING/2 (<string>, line 73)

Definition list ends without a blank line; unexpected unindent.

Sbjct 61 RPIERGYVVNWDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF 120

Query 121 TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL 180
TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL

System Message: WARNING/2 (<string>, line 77)

Definition list ends without a blank line; unexpected unindent.

Sbjct 121 TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL 180

Query 181 TNKLKDWVSYRQLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD 240
TNKLKDWVSYRQLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD

System Message: WARNING/2 (<string>, line 81)

Definition list ends without a blank line; unexpected unindent.

Sbjct 181 TNKLKDWVSYRQLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD 240

Galaxy Wrapper Authors:

* Laura Entrambasaguas
* Ginés Almagro
* Fernando Pérez