What it does

This tool calculates sequence property based descriptor for a peptide descriptor.

• GetAAComp Amino acid compositon descriptors.
• GetDPComp Dipeptide composition descriptors.
• GetTPComp Tri-peptide composition descriptors.
• GetMoreauBrotoAuto Normalized Moreau-Broto autocorrelation descriptors.
• GetMoranAuto Moran autocorrelation descriptors.
• GetGearyAuto Geary autocorrelation descriptors.
• GetCTD Composition Transition Distribution descriptors.
• GetPAAC Type I Pseudo amino acid composition descriptors.
• GetAPAAC Amphiphilic (Type II) Pseudo amino acid composition descriptors.
• GetSOCN Sequence order coupling numbers.
• GetQSO Quasi sequence order descriptors default is 10, maxlag is the maximum lag. (The length of the protein should be larger than maxlag).
• GetTriad Calculate the conjoint triad features from the protein sequence.
• Binary Descriptors Calculate the conjoint triad features from the protein sequence.
• All Calculates all the available descriptors except binary.

Inputes

• Input fasta file Fasta file with peptide sequences.
• Lamda lamda reflects the rank of correlation, must be a non-Negative integer. Lamda should NOT be larger than the length of the input protein sequence.
• Weight weight is designed for the users to put weight on the additional PseAA components. Any value within the range from 0.05 to 0.7 for the weight factor can be used.
• Maxlag maxlag is the maximum lag. a non negative integer. The length of the protein should be larger than maxlag.

Outputs

• Returns tabular file with descriptors.