Galaxy |

FeatureFinderIdentification (version 3.1+galaxy0)

Input file: LC-MS raw data:

select mzml data sets(s)

Input file: Peptide identifications derived directly from 'in':

select idxml data sets(s)

Input file: 'External' peptide identifications:

(e.g. from aligned runs) select idxml data sets(s)

Whether decoy peptides should be quantified (true) or skipped (false):

Minimum score for the best PSM of a spectrum to be used as seed:

Use 'none' for no cutoff

If for every peptide (or seed) also an offset peptide is extracted (true):

Can be used to downstream to determine MBR false transfer rates. (0.0 = disabled)

Parameters for ion chromatogram extractions

Parameters for ion chromatogram extraction 0

Parameters for detecting features in extracted ion chromatograms

Parameters for detecting features in extracted ion chromatograms 0

Parameters for scoring features using a support vector machine (SVM)s

Parameters for scoring features using a support vector machine (SVM) 0

Parameters for fitting elution models to features

Parameters for fitting elution models to features 0

Parameters for fitting exps

Parameters for fitting exp 0

Advanced Options

Advanced Options 0

Optional outputs:

Detects features in MS1 data based on peptide identifications.