This tool allows to select the scale for the Interval-Wise Testing results. In particular, it returns the p-value curves for the different tests performed at the selected scale, and it creates a graphical representation of the Interval-Wise Testing results and a summary plot (optional) at the selected scale.

Input files

RData file with the IWTomicsData object with test results, tabular files with test IDs and feature IDs. These files are created by the tool IWTomics Test and Plot.

Output

The tool returns:

1. TXT file with an adjusted p-value curve for every test performed at the selected scale;
2. PDF file with the plotted test results;
3. PDF file with the summary plot.

Notes

This Galaxy tool has been developed by Fabio Cumbo (Third University of Rome, Italy) and Marzia A. Cremona (The Pennsylvania State University, USA).

It implements a simplified version of the function IWTomicsTest, plotTest and plotSummary for IWTomicsData objects. The complete version can be found in the R/Bioconductor package IWTomics (see vignette).