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Isoplot: Generate plots from isocor output (version 1.3.0+galaxy1)
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We strongly encourage you to read the documentation before using Isoplot.

Isoplot2: Plotting isotopic labelling MS data

Positional arguments:

input_path Path to datafile run_name Name of the current run format Format of generated file
optional arguments:
-h, --help show this help message and exit
--value Choices: "corrected_area", "isotopologue_fraction", "mean_enrichment". Select values to plot. This option can be given multiple times
-m METABOLITE Metabolite(s) to plot. For all, type in 'all'
-c CONDITION Condition(s) to plot. For all, type in 'all'
-t TIME Time(s) to plot. For all, type in 'all'
-tp, --template TEMPLATE_PATH
 Path to template file
-sa, --stacked_areaplot
 Create static stacked areaplot
-bp, --barplot Create static barplot
-mb, --meaned_barplot
 Create static barplot with meaned replicates
-IB, --interactive_barplot
 Create interactive stacked barplot
-IM, --interactive_stacked_meanplot
 Create interactive stacked barplot with meaned replicates
-IS, --interactive_areaplot
 Create interactive stacked areaplot
-hm, --static_heatmap
 Create a static heatmap using mean enrichment data
-cm, --static_clustermap
 Create a static heatmap with clustering using mean enrichment data
-HM, --interactive_heatmap
 Create interactive heatmap using mean enrichment data
-s, --stack Add option if barplots should be unstacked
-v, --verbose Turns logger to debug mode
-a, --annot Add option if annotations should be added on maps