We strongly encourage you to read the documentation before using Isoplot.
Positional arguments:
input_path Path to datafile run_name Name of the current run format Format of generated file
-h, --help | show this help message and exit |
--value | Choices: "corrected_area", "isotopologue_fraction", "mean_enrichment". Select values to plot. This option can be given multiple times |
-m METABOLITE | Metabolite(s) to plot. For all, type in 'all' |
-c CONDITION | Condition(s) to plot. For all, type in 'all' |
-t TIME | Time(s) to plot. For all, type in 'all' |
-tp, --template TEMPLATE_PATH | |
Path to template file | |
-sa, --stacked_areaplot | |
Create static stacked areaplot | |
-bp, --barplot | Create static barplot |
-mb, --meaned_barplot | |
Create static barplot with meaned replicates | |
-IB, --interactive_barplot | |
Create interactive stacked barplot | |
-IM, --interactive_stacked_meanplot | |
Create interactive stacked barplot with meaned replicates | |
-IS, --interactive_areaplot | |
Create interactive stacked areaplot | |
-hm, --static_heatmap | |
Create a static heatmap using mean enrichment data | |
-cm, --static_clustermap | |
Create a static heatmap with clustering using mean enrichment data | |
-HM, --interactive_heatmap | |
Create interactive heatmap using mean enrichment data | |
-s, --stack | Add option if barplots should be unstacked |
-v, --verbose | Turns logger to debug mode |
-a, --annot | Add option if annotations should be added on maps |