Filters and/or masks reads based on length, quality, missing bases and repeats.

See the pRESTO online help for more information.

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Note about limitations of pRESTO tools within Galaxy:

pRESTO tools in galaxy have the following limitations vs. when run at the command line:

• Inputs must be FASTQ format and cannot be FASTA format.

• Multiple inputs files are not supported per argument (e.g. -1, -2 or -s), i.e.

  • Steps that take a pair of fastq inputs can only take two files, not two sets of files
  • Steps that take a single set of fastq inputs can only take a single file

• The --outdir and --outname options are not supported; output files are named directly