What it does
The Root Mean Square Deviation (RMSD) is a standard measure of structural distance between coordinates. This tool can calculate and plot the RMSD of the selected section of the protein (or other molecule).
Input
- Input file in PDB format
- Input file in DCD format
Output
- Image (as PNG) of the RMSD plot.
- Image (as PNG) of the RMSD histogram plot.
- Tab-separated file of raw data.