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Map with Mosaik (version 1.1.2)

FASTQ reads file:

Output format:

Sequencing technology used:

Number of mismatches allowed per sequence:

Alignment candidate threshold:

Determines which hash regions will be aligned with Smith-Waterman

Smith-Waterman band width:

Maximum number of positions stored per seed:

Number of places in the reference the aligner will try to place a particular hash

This tool uses Mosaik to align reads to a reference sequence.