Experimental: Obtain taxonomic lineages, by finding closest OTU in reference phylogeny.
Experimental: Use the resulting tree from 'sepp' and find closest OTU-ID
for every inserted fragment. Then, look up the reference lineage string in
the reference taxonomy.
Parameters
- representative_sequences : FeatureData[Sequence]
- The sequences used for a 'sepp' run to produce the 'tree'.
- tree : Phylogeny[Rooted]
- The tree resulting from inserting fragments into a reference phylogeny,
i.e. the output of function 'sepp'
- reference_taxonomy : FeatureData[Taxonomy], optional
- Reference taxonomic table that maps every OTU-ID into a taxonomic
lineage string.
Returns
- classification : FeatureData[Taxonomy]
- Taxonomic lineages for inserted fragments.