qiime_taxa_collapse.xml - This file requires an entry in the tool_data_table_conf.xml file. Upload a file named tool_data_table_conf.xml.sample to the repository that includes the required entry to correct this error.

qiime taxa collapse (version 2019.4)

Collapse features by their taxonomy at the specified level

Collapse groups of features that have the same taxonomic assignment through the specified level. The frequencies of all features will be summed when they are collapsed.

Parameters

table : FeatureTable[Frequency]: Feature table to be collapsed.
taxonomy : FeatureData[Taxonomy]: Taxonomic annotations for features in the provided feature table. All features in the feature table must have a corresponding taxonomic annotation. Taxonomic annotations that are not present in the feature table will be ignored.
level : Int: The taxonomic level at which the features should be collapsed. All ouput features will have exactly this many levels of taxonomic annotation.

Returns

collapsed_table : FeatureTable[Frequency]: The resulting feature table, where all features are now taxonomic annotations with the user-specified number of levels.