Repository 'stacks'
3:0e0ff9e9c761 (2015-09-28)

Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository ziptool revision e466f86a4520 owned by cmonjeau
Repository decompress_an_archive_and_merge revision 78d968479d52 owned by cmonjeau
Repository archive_datatypes revision ddf34b1d55c8 owned by cmonjeau
Repository archive_datatypes revision ddf34b1d55c8 owned by cmonjeau
Repository package_stacks_1_18 revision 6bb02bb29819 owned by cmonjeau
Repository package_bwa_0_6_2 revision 0778635a84ba owned by devteam (prior install required)
Repository package_velvet_1_2_10 revision 1c500c3e7fdf owned by rjullien (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bwa 0.6.2 package
stacks 1.18 package
velvet 1.2.10 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Run the STACKS cleaning script 1.1.0 any
from zip file with fastqsanger files 1.2.3 any
Run the STACKS populations program 1.0.0 any
Run the STACKS ref_map.pl wrapper 1.0.0 any
Run the STACKS denovo_map.pl wrapper 1.0.0 any
Run the STACKS genotypes program 1.0.0 any
Run the STACKS sort_read_pairs.pl and exec_velvet.pl wrappers 1.1.1 any
for STACKS denovomap and refmap 1.0.0 any