| Previous changeset 9:5af94af9ec8f (2017-05-21) Next changeset 11:46f061f3cfeb (2022-03-22) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 689ccfe1532a4de7b60fe69cd3945601d76aefb6" |
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modified:
macros.xml stacks_genotypes.xml |
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| diff -r 5af94af9ec8f -r 00f4a4e553ae macros.xml --- a/macros.xml Sun May 21 18:53:07 2017 -0400 +++ b/macros.xml Thu Sep 26 10:22:20 2019 -0400 |
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| @@ -316,7 +316,7 @@ <data format="tabular" name="out_treemix_loci" label="TreeMix format (loci) with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.treemix.log"> <filter>populations_output['treemix']</filter> </data> - <data format="tabular" name="out_fastpĥase" label="fastPHASE format with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.un.fastphase.inp"> + <data format="tabular" name="out_fastphase" label="fastPHASE format with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.un.fastphase.inp"> <filter>populations_output['fastphase']</filter> </data> <data format="tabular" name="out_phase" label="PHASE format with ${tool.name} on ${on_string}" from_work_dir="stacks_outputs/batch_1.un.phase.inp"> |
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| diff -r 5af94af9ec8f -r 00f4a4e553ae stacks_genotypes.xml --- a/stacks_genotypes.xml Sun May 21 18:53:07 2017 -0400 +++ b/stacks_genotypes.xml Thu Sep 26 10:22:20 2019 -0400 |
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| @@ -117,8 +117,8 @@ <param name="mindepth" type="integer" value="" optional="true" argument="-m" label="Minimum stack depth required before exporting a locus in a particular individual" /> <param name="lnl" type="float" value="" optional="true" argument="--lnl_lim" label="Filter loci with log likelihood values below this threshold" /> - <param name="whitelist" argument="-W" format="txt,tabular" type="data" optional="true" label="Specify a file containing Whitelisted markers to include in the export" /> - <param name="blacklist" argument="-B" format="txt,tabular" type="data" optional="true" label="Specify a file containing Blacklisted markers to be excluded from the export" /> + <param name="whitelist" argument="-W" format="txt,tabular" type="data" optional="true" label="Specify a file containing markers to include in the export" /> + <param name="blacklist" argument="-B" format="txt,tabular" type="data" optional="true" label="Specify a file containing markers to exclude from the export" /> <param name="manual_cor" argument="--cor_path" type="data" format="tabular,txt" optional="true" label="Path to file containing manual genotype corrections from a Stacks SQL database to incorporate into output." /> |