Repository 'transtermhp'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/transtermhp

Changeset 5:012171ba9fce (2019-12-03)
Previous changeset 4:9a90656a1af9 (2018-10-30) Next changeset 6:42b38f6d9f68 (2024-03-12)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transtermhp commit 7f6797ad21f1d9170bf38210d0f0fde5065dccfb"
modified:
transtermhp.xml
b
diff -r 9a90656a1af9 -r 012171ba9fce transtermhp.xml
--- a/transtermhp.xml Tue Oct 30 20:25:05 2018 -0400
+++ b/transtermhp.xml Tue Dec 03 08:56:57 2019 -0500
[
@@ -6,6 +6,8 @@
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <command><![CDATA[
+## fix for TRANSTERMHP not set on containers
+TRANSTERMHP=\${TRANSTERMHP:-\$(dirname \$(command -v transterm))/../data/expterm.dat} &&
 #if $reference_genome.source == 'history':
     ln -s '$reference_genome.genome_fasta' genomeref.fa &&
 #end if