Repository 'deeptools_plot_coverage'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_coverage

Changeset 23:017710636d31 (2019-02-20)
Previous changeset 22:3a539cb281ba (2019-02-19) Next changeset 24:3b9d990a0a0e (2019-04-02)
Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3cefc7d64faa53ef9a4e5984c7b275fc47cbdaaf
modified:
deepTools_macros.xml
test-data/estimateReadFiltering.txt
b
diff -r 3a539cb281ba -r 017710636d31 deepTools_macros.xml
--- a/deepTools_macros.xml Tue Feb 19 09:59:04 2019 -0500
+++ b/deepTools_macros.xml Wed Feb 20 07:58:20 2019 -0500
[
@@ -512,7 +512,7 @@
 
     <token name="@multiple_input_bigwigs@">
 <![CDATA[
-        #if $custom_labels_conditional.custom_labels_select == "Yes":
+        #if $custom_sample_labels_conditional.custom_labels_select == "Yes":
             #set custom_labels=labels
         #end if
         #set files=[]
@@ -533,7 +533,7 @@
                 #silent $labels.append("'%s'" % $identifier)
             #end for
         #end if
-        #if $custom_labels_conditional.custom_labels_select == "Yes":
+        #if $custom_sample_labels_conditional.custom_labels_select == "Yes":
             #set labels=custom_labels
         #end if
 ]]>
b
diff -r 3a539cb281ba -r 017710636d31 test-data/estimateReadFiltering.txt
--- a/test-data/estimateReadFiltering.txt Tue Feb 19 09:59:04 2019 -0500
+++ b/test-data/estimateReadFiltering.txt Wed Feb 20 07:58:20 2019 -0500
b
@@ -1,3 +1,3 @@
 Sample Total Reads Mapped Reads Alignments in blacklisted regions Estimated mapped reads filtered Below MAPQ Missing Flags Excluded Flags Internally-determined Duplicates Marked Duplicates Singletons Wrong strand
-paired_chr2L.bam 12644 12589 0 1395.9 4149.0 0.0 0.0 0.0 0.0 55.0 0.0
-paired_chr2L.bam 12644 12589 0 1395.9 4149.0 0.0 0.0 0.0 0.0 55.0 0.0
+paired_chr2L.bam 12644 12589 0 4192.0 4149.0 0.0 0.0 0.0 0.0 55.0 0.0
+paired_chr2L.bam 12644 12589 0 4192.0 4149.0 0.0 0.0 0.0 0.0 55.0 0.0