| Previous changeset 12:38769345062e (2018-03-22) Next changeset 14:c16dbe4e2db2 (2018-08-06) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 1cf6ca65ca6bbf3553d830f13be1760dcd667cae |
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modified:
macs2_callpeak.xml |
| b |
| diff -r 38769345062e -r 01cded2297b7 macs2_callpeak.xml --- a/macs2_callpeak.xml Thu Mar 22 09:43:37 2018 -0400 +++ b/macs2_callpeak.xml Fri May 04 21:39:56 2018 -0400 |
| [ |
| @@ -243,34 +243,34 @@ </inputs> <outputs> <!--callpeaks output--> - <data name="output_tabular" format="tabular" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (Peaks in tabular format)"> + <data name="output_tabular" format="tabular" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (Peaks in tabular format)"> <filter> outputs and 'peaks_tabular' in outputs</filter> </data> - <data name="output_broadpeaks" format="bed" from_work_dir="MACS2_peaks.broadPeak" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (broad Peaks)"> + <data name="output_broadpeaks" format="bed" from_work_dir="MACS2_peaks.broadPeak" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (broad Peaks)"> <filter> (( advanced_options['broad_options']['broad_options_selector'] == "broad" )) </filter> </data> - <data name="output_gappedpeaks" format="bed" from_work_dir="MACS2_peaks.gappedPeak" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (gapped Peaks)"> + <data name="output_gappedpeaks" format="bed" from_work_dir="MACS2_peaks.gappedPeak" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (gapped Peaks)"> <filter> (( advanced_options['broad_options']['broad_options_selector'] == "broad" )) </filter> </data> - <data name="output_narrowpeaks" format="bed" from_work_dir="MACS2_peaks.narrowPeak" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (narrow Peaks)"> + <data name="output_narrowpeaks" format="bed" from_work_dir="MACS2_peaks.narrowPeak" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (narrow Peaks)"> <filter> (( advanced_options['broad_options']['broad_options_selector'] == "nobroad" )) </filter> </data> - <data name="output_summits" format="bed" from_work_dir="MACS2_summits.bed" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (summits in BED)"> + <data name="output_summits" format="bed" from_work_dir="MACS2_summits.bed" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (summits in BED)"> <filter>outputs and 'summits' in outputs</filter> </data> - <data name="output_plot" format="pdf" from_work_dir="MACS2_model.pdf" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (plot)"> + <data name="output_plot" format="pdf" from_work_dir="MACS2_model.pdf" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (plot)"> <filter> (( outputs and 'pdf' in outputs and @@ -279,13 +279,13 @@ )) </filter> </data> - <data name="output_treat_pileup" format="bedgraph" from_work_dir="MACS2_treat_pileup.bdg" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Treatment)"> + <data name="output_treat_pileup" format="bedgraph" from_work_dir="MACS2_treat_pileup.bdg" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Treatment)"> <filter>outputs and 'bdg' in outputs</filter> </data> - <data name="output_control_lambda" format="bedgraph" from_work_dir="MACS2_control_lambda.bdg" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Control)"> + <data name="output_control_lambda" format="bedgraph" from_work_dir="MACS2_control_lambda.bdg" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Control)"> <filter>outputs and 'bdg' in outputs</filter> </data> - <data name="output_extra_files" format="html" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (html report)"> + <data name="output_extra_files" format="html" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (html report)"> <filter>outputs and 'html' in outputs</filter> </data> </outputs> |