| Previous changeset 3:9f243677c4c6 (2017-02-07) Next changeset 5:69e0806b63a4 (2019-10-01) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/gffread commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5 |
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modified:
cuff_macros.xml gffread.xml |
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removed:
tool_dependencies.xml |
| b |
| diff -r 9f243677c4c6 -r 0232f19d300f cuff_macros.xml --- a/cuff_macros.xml Tue Feb 07 18:41:04 2017 -0500 +++ b/cuff_macros.xml Sun Feb 19 12:09:52 2017 -0500 |
| b |
| @@ -8,14 +8,6 @@ </requirements> </xml> - <xml name="stdio"> - <stdio> - <exit_code range="1:" /> - <exit_code range=":-1" /> - <regex match="Error" /> - <regex match="Exception" /> - </stdio> - </xml> <xml name="condition_inputs"> <!-- DEFAULT : use BAM/SAM files --> <conditional name="in_type"> |
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| diff -r 9f243677c4c6 -r 0232f19d300f gffread.xml --- a/gffread.xml Tue Feb 07 18:41:04 2017 -0500 +++ b/gffread.xml Sun Feb 19 12:09:52 2017 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="gffread" name="gffread" version="@VERSION@.0"> +<tool id="gffread" name="gffread" version="@VERSION@.1"> <description>Filters and/or converts GFF3/GTF2 records</description> <macros> <import>cuff_macros.xml</import> @@ -48,8 +48,7 @@ </xml> </macros> <expand macro="requirements" /> - <expand macro="stdio" /> - <command> + <command detect_errors="aggressive"> <![CDATA[ #if $reference_genome.source == 'history': ln -s '$reference_genome.genome_fasta' genomeref.fa && |
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| diff -r 9f243677c4c6 -r 0232f19d300f tool_dependencies.xml --- a/tool_dependencies.xml Tue Feb 07 18:41:04 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="cufflinks" version="2.2.1"> - <repository changeset_revision="899067a260d1" name="package_cufflinks_2_2_1" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency> |