| Previous changeset 0:7c2e9bc2123b (2021-05-05) Next changeset 2:8fef980d48b5 (2021-08-16) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pretext commit 663ac3c3df3458f3bd5f1c9d49b3ebf9cd97f52c" |
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modified:
pretext_map.xml test-data/output_2.pretext test-data/test.sam |
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| diff -r 7c2e9bc2123b -r 02831bf9e95f pretext_map.xml --- a/pretext_map.xml Wed May 05 15:09:54 2021 +0000 +++ b/pretext_map.xml Thu May 20 07:57:57 2021 +0000 |
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| @@ -1,6 +1,6 @@ <tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> <macros> - <token name="@TOOL_VERSION@">0.1.5</token> + <token name="@TOOL_VERSION@">0.1.6</token> <token name="@VERSION_SUFFIX@">0</token> </macros> <requirements> @@ -63,19 +63,21 @@ </param> <when value=""/> <when value="in"> - <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1, seq_2"> + <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1,seq_2"> <sanitizer> <valid initial="string.ascii_letters,string.digits"> <add value="_"/> + <add value=","/> </valid> </sanitizer> </param> </when> <when value="out"> - <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1, seq_2"> + <param name="filter_list" type="text" label="Filter list" help="Comma separated list of sequence names to use as a filter" value="seq_1,seq_2"> <sanitizer> <valid initial="string.ascii_letters,string.digits"> <add value="_"/> + <add value=","/> </valid> </sanitizer> </param> @@ -107,7 +109,7 @@ </conditional> <conditional name="filter"> <param name="filter_type" value="out"/> - <param name="filter_list" value="chrM, chr8, chr9"/> + <param name="filter_list" value="chrM,chr8,chr9"/> </conditional> <output name="pretext_map_out" file="output_2.pretext"/> </test> |
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| diff -r 7c2e9bc2123b -r 02831bf9e95f test-data/output_2.pretext |
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| Binary file test-data/output_2.pretext has changed |
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| diff -r 7c2e9bc2123b -r 02831bf9e95f test-data/test.sam --- a/test-data/test.sam Wed May 05 15:09:54 2021 +0000 +++ b/test-data/test.sam Thu May 20 07:57:57 2021 +0000 |
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| @@ -1,3 +1,6 @@ +@HD VN:1.3 SO:queryname +@SQ SN:ref LN:45 +@SQ SN:ref2 LN:40 HWI-EAS269B:8:34:797:623 145 chr1 16632182 255 27M = 16631977 0 CCATTTCCTGTATGCTGTAAAGTACAA IIIIIIIIIIIIIIIIIIIIIIIIIII NM:i:0 NH:i:1 HWI-EAS269B:8:40:39:1184 145 chr1 24620331 3 27M = 24620115 0 ATTTATGTGGTTTCGTTTACCTTCTAT IIIIIIIIIIIIIIIIIIIIIIIIIII NM:i:0 NH:i:2 CC:Z:chrM CP:i:9060 HWI-EAS269B:8:58:533:1198 81 chr1 88426079 255 27M = 88423429 0 GAAGAGGAAGAAGGTGGGGAGGAAGAG IIIG?IIIIIIIIIIIIIIIIIIIIII NM:i:0 NH:i:1 |