| Previous changeset 29:f6877ad76b00 (2022-07-06) Next changeset 31:0d4acadabb04 (2024-02-26) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2 commit 3ae56dd669038a65c3f60ba64c67cbefb254ab5e |
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modified:
bowtie2_macros.xml bowtie2_wrapper.xml test-data/bowtie2-test1.bam test-data/bowtie2-test2.bam test-data/bowtie2-test_fasta_in.bam test-data/bowtie2-test_fasta_in_bam_qname_input_sorted.bam test-data/bowtie2-test_il.bam |
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| diff -r f6877ad76b00 -r 03e9b2fbc005 bowtie2_macros.xml --- a/bowtie2_macros.xml Wed Jul 06 10:26:09 2022 +0000 +++ b/bowtie2_macros.xml Thu Nov 03 19:37:50 2022 +0000 |
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| @@ -1,5 +1,6 @@ <macros> - <token name="@TOOL_VERSION@">2.4.5</token> + <token name="@TOOL_VERSION@">2.5.0</token> + <token name="@VERSION_SUFFIX@">0</token> <!-- Import this at the top of your command block and then define rg_auto_name. --> <token name="@define_read_group_helpers@"> |
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| diff -r f6877ad76b00 -r 03e9b2fbc005 bowtie2_wrapper.xml --- a/bowtie2_wrapper.xml Wed Jul 06 10:26:09 2022 +0000 +++ b/bowtie2_wrapper.xml Thu Nov 03 19:37:50 2022 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="bowtie2" name="Bowtie2" version="@TOOL_VERSION@+galaxy1" profile="20.05"> +<tool id="bowtie2" name="Bowtie2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> <description>- map reads against reference genome</description> <macros> <import>bowtie2_macros.xml</import> @@ -8,7 +8,7 @@ </xrefs> <requirements> <requirement type="package" version="@TOOL_VERSION@">bowtie2</requirement> - <requirement type="package" version="1.14">samtools</requirement> + <requirement type="package" version="1.16.1">samtools</requirement> </requirements> <version_command>bowtie2 --version</version_command> <command detect_errors="exit_code"><![CDATA[ |
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| diff -r f6877ad76b00 -r 03e9b2fbc005 test-data/bowtie2-test1.bam |
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| Binary file test-data/bowtie2-test1.bam has changed |
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| diff -r f6877ad76b00 -r 03e9b2fbc005 test-data/bowtie2-test2.bam |
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| Binary file test-data/bowtie2-test2.bam has changed |
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| diff -r f6877ad76b00 -r 03e9b2fbc005 test-data/bowtie2-test_fasta_in.bam |
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| Binary file test-data/bowtie2-test_fasta_in.bam has changed |
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| diff -r f6877ad76b00 -r 03e9b2fbc005 test-data/bowtie2-test_fasta_in_bam_qname_input_sorted.bam |
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| Binary file test-data/bowtie2-test_fasta_in_bam_qname_input_sorted.bam has changed |
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| diff -r f6877ad76b00 -r 03e9b2fbc005 test-data/bowtie2-test_il.bam |
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| Binary file test-data/bowtie2-test_il.bam has changed |