| Previous changeset 1:9e58ff014088 (2017-03-28) Next changeset 3:a8a278849c18 (2021-03-19) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rnaspades commit b7a410ba698811d0b903b3c72191ae6564bf5a8c" |
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modified:
rnaspades.xml |
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| diff -r 9e58ff014088 -r 03fd468e158f rnaspades.xml --- a/rnaspades.xml Tue Mar 28 10:53:20 2017 -0400 +++ b/rnaspades.xml Thu Jan 07 17:50:06 2021 +0000 |
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| @@ -8,10 +8,15 @@ </stdio> <command> <![CDATA[ + + if [[ -n \$GALAXY_MEMORY_MB ]]; then + GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 )); + fi && + rnaspades.py -o . ## Forces unzipped output, faster --disable-gzip-output - $draft $onlyassembler -t \${GALAXY_SLOTS:-4} $iontorrent -k $kmer + $draft $onlyassembler -t \${GALAXY_SLOTS:-4} -m \${GALAXY_MEMORY_GB:-250} $iontorrent -k $kmer ## Sequence files, libraries #for $i, $library in enumerate( $libraries, start=1 ): #if str( $library.lib_type ) == "paired_end": |