| Previous changeset 0:80f990fb3ba6 (2015-10-06) |
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Commit message:
Uploaded |
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modified:
sed-fasta.xml |
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| diff -r 80f990fb3ba6 -r 04871c6242d2 sed-fasta.xml --- a/sed-fasta.xml Tue Oct 06 12:53:24 2015 -0400 +++ b/sed-fasta.xml Tue Oct 06 13:05:50 2015 -0400 |
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| @@ -1,9 +1,9 @@ -<tool id="cat_list" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag"> - <description>tail-to-head</description> +<tool id="sed_fasta" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag" version="0.2"> + <description>remove leading characters fasta file</description> <command> - cat $input1 | sed 's/gi.*gb\|//g' | sed 's/\|//g' >> $out_file1 </command> + cat $input1 | sed 's/gi.*gb[|]//g' | sed 's/[|]//g' >> $out_file1 </command> <inputs> - <param name="input1" type="data" label="remove gi to gb characters" multiple="true" /> + <param name="input1" type="data" label="remove gi to gb characters" /> </inputs> <outputs> <data name="out_file1" format="input" metadata_source="input1"/> |