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Commit message:
Deleted selected files |
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removed:
README_tophat2_toolshed |
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| diff -r 03e27fba961c -r 04b86e142e90 README_tophat2_toolshed --- a/README_tophat2_toolshed Fri Feb 12 08:30:33 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,18 +0,0 @@ -- Create a PATH.ini file in galaxy-dist/ repository: -- Add these 3 lines in your PATH.ini file : -TOPHAT2_PATH=/path/to/bin/tophat2 -FILEPATH_DEV=/path/to/database/files/workspace/ -BOWTIE2_INDEXATION_PATH=/path/to/bin/bowtie2 - -- To know your path to tophat2 bin, you could use this command line : -which tophat2 - -- Create a "workspace" directory in /database/files/ -- chmod 777 /path/to/database/files/workspace/ -- In sm_tophat2.pl file, complete the path to PATH.ini file -my $cfg = Config::IniFiles->new( -file => "/path/to/PATH.ini" ); - -- In your tool_conf.xml file, add this line in your RNAseq section : - <tool file="/path/to/sm_tophat2.xml" /> - - |