Repository 'saint_preprocessing'
hg clone https://toolshed.g2.bx.psu.edu/repos/bornea/saint_preprocessing

Changeset 34:05c5844e037b (2016-04-27)
Previous changeset 33:d223d815e9c5 (2016-04-27) Next changeset 35:26cc583a4ae4 (2016-05-19)
Commit message:
Uploaded
modified:
SAINT_preprocessing_mq_pep.py
b
diff -r d223d815e9c5 -r 05c5844e037b SAINT_preprocessing_mq_pep.py
--- a/SAINT_preprocessing_mq_pep.py Wed Apr 27 10:35:13 2016 -0400
+++ b/SAINT_preprocessing_mq_pep.py Wed Apr 27 10:35:22 2016 -0400
b
@@ -232,7 +232,8 @@
         seq = get_info(a).seqlength
         GN = get_info(a).genename
         if seq != 'NA':
-            output_file.write(a+"\t"+str(seq)+ "\t" + str(GN) + "\n")
+            if GN != 'NA':
+                output_file.write(a+"\t"+str(seq)+ "\t" + str(GN) + "\n")
     output_file.close()