| Previous changeset 5:02bbace216f2 (2024-11-22) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit d2787f61f714a0b30eb2806456b78d2b1e2ff280 |
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modified:
macros.xml test-data/extract_kraken_reads/out1.k1.11176.children.fa test-data/extract_kraken_reads/out1.k1.e10386.children.fa test-data/extract_kraken_reads/out1.k2.11176.fa test-data/extract_kraken_reads/out1.k2.11176.fq test-data/extract_kraken_reads/out1.k2.11176.max2.fa test-data/extract_kraken_reads/out1.k2.11176.parents.fa test-data/extract_kraken_reads/out1.k2.exclude_both.fa test-data/extract_kraken_reads/out2.k2.11176.fa test-data/mpa_output.tabular test-data/mpa_output_intermediate.tabular test-data/mpa_output_percentages.tabular test-data/output.tabular |
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| diff -r 02bbace216f2 -r 05e78a90e02d macros.xml --- a/macros.xml Fri Nov 22 09:29:31 2024 +0000 +++ b/macros.xml Tue Aug 05 12:50:58 2025 +0000 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.2</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@TOOL_VERSION@">1.2.1</token> + <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.01</token> <xml name="biotools"> <xrefs> |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out1.k1.11176.children.fa |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out1.k1.e10386.children.fa |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out1.k2.11176.fa |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out1.k2.11176.fq |
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| Binary file test-data/extract_kraken_reads/out1.k2.11176.fq has changed |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out1.k2.11176.max2.fa |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out1.k2.11176.parents.fa |
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| Binary file test-data/extract_kraken_reads/out1.k2.11176.parents.fa has changed |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out1.k2.exclude_both.fa |
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| Binary file test-data/extract_kraken_reads/out1.k2.exclude_both.fa has changed |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/extract_kraken_reads/out2.k2.11176.fa |
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| Binary file test-data/extract_kraken_reads/out2.k2.11176.fa has changed |
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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/mpa_output.tabular --- a/test-data/mpa_output.tabular Fri Nov 22 09:29:31 2024 +0000 +++ b/test-data/mpa_output.tabular Tue Aug 05 12:50:58 2025 +0000 |
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| b'@@ -1,215 +1,215 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| diff -r 02bbace216f2 -r 05e78a90e02d test-data/mpa_output_intermediate.tabular --- a/test-data/mpa_output_intermediate.tabular Fri Nov 22 09:29:31 2024 +0000 +++ b/test-data/mpa_output_intermediate.tabular Tue Aug 05 12:50:58 2025 +0000 |
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| b'@@ -1,298 +1,298 @@\n 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|
| b |
| diff -r 02bbace216f2 -r 05e78a90e02d test-data/mpa_output_percentages.tabular --- a/test-data/mpa_output_percentages.tabular Fri Nov 22 09:29:31 2024 +0000 +++ b/test-data/mpa_output_percentages.tabular Tue Aug 05 12:50:58 2025 +0000 |
| b |
| b'@@ -1,215 +1,215 @@\n-k__Eukaryota\t56.0\n-k__Eukaryota|k__Metazoa\t29.78\n-k__Eukaryota|k__Metazoa|p__Chordata\t29.78\n-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia\t29.78\n-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates\t29.78\n-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae\t29.78\n-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo\t29.78\n-k__Eukaryota|k__Metazoa|p__Chordata|c__Mammalia|o__Primates|f__Hominidae|g__Homo|s__Homo_sapiens\t29.78\n-k__Eukaryota|k__Fungi\t25.33\n-k__Eukaryota|k__Fungi|p__Ascomycota\t25.26\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes\t24.89\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales\t24.89\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae\t24.67\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces\t24.37\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_cerevisiae\t21.7\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_paradoxus\t1.11\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Saccharomyces|s__Saccharomyces_eubayanus\t0.74\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Saccharomycetaceae|g__Kluyveromyces|s__Kluyveromyces_marxianus\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Trichomonascaceae|g__Sugiyamaella|s__Sugiyamaella_lignohabitans\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Saccharomycetes|o__Saccharomycetales|f__Debaryomycetaceae|g__Candida|s__Candida_dubliniensis\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes\t0.22\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Sordariales|f__Sordariaceae|g__Neurospora|s__Neurospora_crassa\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Sordariomycetes|o__Magnaporthales|f__Pyriculariaceae|g__Pyricularia|s__Pyricularia_pennisetigena\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Eurotiomycetes|o__Eurotiales|f__Aspergillaceae|g__Aspergillus|s__Aspergillus_luchuensis\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetales\t0.07\n-k__Eukaryota|k__Fungi|p__Ascomycota|c__Schizosaccharomycetes|o__Schizosaccharomycetale'..b'oidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium\t0.07\n+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Blattabacteriaceae|g__Blattabacterium|s__Blattabacterium_cuenoti\t0.07\n+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae\t0.07\n+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Flavobacteriaceae|g__Olleya\t0.07\n+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae\t0.07\n+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium\t0.07\n+d__Bacteria|p__Bacteroidetes|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Chryseobacterium|s__Chryseobacterium_sp._DH-B6\t0.07\n+d__Bacteria|p__Bacteroidetes|c__Bacteroidia\t0.15\n+d__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales\t0.15\n+d__Bacteria|p__Bacteroi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|
| b |
| diff -r 02bbace216f2 -r 05e78a90e02d test-data/output.tabular --- a/test-data/output.tabular Fri Nov 22 09:29:31 2024 +0000 +++ b/test-data/output.tabular Tue Aug 05 12:50:58 2025 +0000 |
| b |
| @@ -211,3 +211,4 @@ 0 k__Archaea p__Thaumarchaeota c__Nitrososphaeria o__Nitrososphaerales 0 k__Archaea p__Thaumarchaeota c__Nitrososphaeria o__Nitrososphaerales f__Nitrososphaeraceae 0 k__Archaea p__Thaumarchaeota c__Nitrososphaeria o__Nitrososphaerales f__Nitrososphaeraceae g__Candidatus_Nitrosocosmicus +1 k__Archaea p__Thaumarchaeota c__Nitrososphaeria o__Nitrososphaerales f__Nitrososphaeraceae g__Candidatus_Nitrosocosmicus s__Candidatus_Nitrosocosmicus_franklandus |