Next changeset 1:288db50d1fb9 (2017-11-25) |
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iqtree/ commit 494efe4359ba046587dd2d5585464a3df05ba997 |
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iqtree.xml test-data/example.phy |
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diff -r 000000000000 -r 05ee0a74faef iqtree.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/iqtree.xml Wed Nov 15 12:45:24 2017 -0500 |
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b'@@ -0,0 +1,862 @@\n+<tool id="iqtree" name="IQ-TREE" version="1.5.5" >\n+ <description>Phylogenomic / evolutionary tree construction from multiple sequences</description>\n+ <requirements>\n+ <requirement type="package" version="1.5.5">iqtree</requirement>\n+ </requirements>\n+ <command detect_errors=\'exit_code\' ><![CDATA[\n+iqtree\n+ -pre PREF\n+ -nt AUTO\n+ -redo\n+\n+## file\n+#if $general_options.s\n+ -s \'$general_options.s\'\n+#end if\n+\n+## file\n+#if $general_options.t\n+ -t \'$general_options.t\'\n+#end if\n+\n+## file\n+#if $general_options.te\n+ -te \'$general_options.te\'\n+#end if\n+\n+#if str($general_options.st) != \'\'\n+ -st \'$general_options.st\'\n+#end if\n+\n+#if str($general_options.seed) != \'\'\n+ -seed \'$general_options.seed\'\n+#end if\n+\n+$general_options.keep_ident\n+$general_options.safe\n+\n+#if str($likelihood_mapping.lmap) != \'\'\n+ -lmap \'$likelihood_mapping.lmap\'\n+#end if\n+\n+## file\n+#if $likelihood_mapping.lmclust\n+ -lmclust \'$likelihood_mapping.lmclust\'\n+#end if\n+\n+$likelihood_mapping.wql\n+\n+#if str($modelling_parameters.automatic_model.cond_model.m) != \'\'\n+ -m \'$modelling_parameters.automatic_model.cond_model.m\'\n+#end if\n+\n+#if str($modelling_parameters.automatic_model.rcluster) != \'\'\n+ -rcluster \'$modelling_parameters.automatic_model.rcluster\'\n+#end if\n+ \n+#if str($modelling_parameters.automatic_model.mset) != \'\'\n+ -mset \'$modelling_parameters.automatic_model.mset\'\n+#end if\n+ \n+#if str($modelling_parameters.automatic_model.msub) != \'\'\n+ -msub \'$modelling_parameters.automatic_model.msub\'\n+#end if\n+ \n+#if str($modelling_parameters.automatic_model.mfreq) != \'\'\n+ -mfreq \'$modelling_parameters.automatic_model.mfreq\'\n+#end if\n+\n+#if str($modelling_parameters.automatic_model.mrate) != \'\'\n+ -mrate \'$modelling_parameters.automatic_model.mrate\'\n+#end if\n+\n+#if str($modelling_parameters.automatic_model.cmin) != \'\'\n+ -cmin \'$modelling_parameters.automatic_model.cmin\'\n+#end if\n+\n+#if str($modelling_parameters.automatic_model.cmax) != \'\'\n+ -cmax \'$modelling_parameters.automatic_model.cmax\'\n+#end if\n+\n+#if str($modelling_parameters.automatic_model.merit) != \'\'\n+ -merit \'$modelling_parameters.automatic_model.merit\'\n+#end if\n+\n+$modelling_parameters.automatic_model.mtree\n+\n+#if str($modelling_parameters.automatic_model.madd) != \'\'\n+ -madd \'$modelling_parameters.automatic_model.madd\'\n+#end if\n+\n+## file\n+#if $modelling_parameters.automatic_model.mdef\n+ -mdef \'$modelling_parameters.automatic_model.mdef\'\n+#end if\n+\n+$modelling_parameters.specifying_substitution.mwopt\n+\n+#if str($modelling_parameters.rate_heterogeneity.a) != \'\'\n+ -a \'$modelling_parameters.rate_heterogeneity.a\'\n+#end if\n+\n+$modelling_parameters.rate_heterogeneity.gmedian\n+\n+#if str($modelling_parameters.rate_heterogeneity.i) != \'\'\n+ -i \'$modelling_parameters.rate_heterogeneity.i\'\n+#end if\n+\n+$modelling_parameters.rate_heterogeneity.opt_gamma_inv\n+$modelling_parameters.rate_heterogeneity.wsr\n+\n+## file\n+#if $modelling_parameters.partition_model.q\n+ -q \'$modelling_parameters.partition_model.q\'\n+#end if\n+\n+$modelling_parameters.partition_model.spp\n+\n+## file\n+#if $modelling_parameters.partition_model.sp\n+ -sp \'$modelling_parameters.partition_model.sp\'\n+#end if\n+\n+## file\n+#if $modelling_parameters.site_specific_frequency.ft\n+ -ft \'$modelling_parameters.site_specific_frequency.ft\'\n+#end if\n+\n+#if str($modelling_parameters.site_specific_frequency.fs) != \'\'\n+ -fs \'$modelling_parameters.site_specific_frequency.fs\'\n+#end if\n+\n+$modelling_parameters.site_specific_frequency.fmax\n+\n+#if str($tree_parameters.tree_search.ninit) != \'\'\n+ -ninit \'$tree_parameters.tree_search.ninit\'\n+#end if\n+\n+#if str($tree_parameters.tree_search.ntop) != \'\'\n+ -ntop \'$tree_parameters.tree_search.ntop\'\n+#end if\n+\n+#if str($tree_parameters.tree_search.nbest) != \'\'\n+ -nbest \'$tree_parameters.tree_search.nbest\'\n+#end if\n+\n+#if str($tree_parameters.tree_search.nstop) != \'\'\n+ -nstop \'$tree_parameters.tree_search.'..b'sion 1.6 we provide a new option **-bnni** to reduce the risk of overestimating branch supports with UFBoot due to severe model violations. With this option UFBoot will further optimize each bootstrap tree using a hill-climbing nearest neighbor interchange (NNI) search based directly on the corresponding bootstrap alignment.\n+\n+Thus, if severe model violations are present in the data set at hand, users are advised to append **-bnni** to the regular UFBoot command:\n+\n+iqtree -s example.phy -m TIM2+I+G -bb 1000 -bnni\n+\n+For more details see:\n+\n+ D.T. Hoang, O. Chernomor, A. von Haeseler, B.Q. Minh, L.S. Vinh (2017) UFBoot2: Improving the ultrafast bootstrap approximation.\n+\n+\n+Assessing branch supports with standard nonparametric bootstrap\n+----------------------------------------------------------------\n+\n+The standard nonparametric bootstrap is invoked by the **-b** option:\n+\n+iqtree -s example.phy -m TIM2+I+G -b 100\n+\n+**-b** specifies the number of bootstrap replicates where 100\n+is the minimum recommended number. The output files are similar to those produced by the UFBoot procedure. \n+\n+\n+\n+Assessing branch supports with single branch tests\n+--------------------------------------------------\n+\n+IQ-TREE provides an implementation of the SH-like approximate likelihood ratio test ([Guindon et al., 2010]). To perform this test, run:\n+\n+::\n+\n+ iqtree -s example.phy -m TIM2+I+G -alrt 1000\n+\n+**-alrt** specifies the number of bootstrap replicates for SH-aLRT where 1000 is the minimum number recommended. \n+\n+IQ-TREE also supports other tests such as the aBayes test (Anisimova et al., 2011) and the local bootstrap test (Adachi and Hasegawa, 1996).\n+\n+You can also perform both SH-aLRT and the ultrafast bootstrap within one single run:\n+\n+::\n+\n+ iqtree -s example.phy -m TIM2+I+G -alrt 1000 -bb 1000\n+\n+The branches of the resulting **.treefile** will be assigned with both SH-aLRT and UFBoot support values, which are readable by any tree viewer program like FigTree, Dendroscope or ETE. You can also look at the textual tree figure in **.iqtree** file:\n+\n+**NOTE**: Tree is UNROOTED although outgroup taxon \'LngfishAu\' is drawn at root\n+Numbers in parentheses are SH-aLRT support (%) / ultrafast bootstrap support (%)\n+\n+::\n+\n+ +-------------LngfishAu\n+ |\n+ | +--------------LngfishSA\n+ +-------| (100/100)\n+ | +------------LngfishAf\n+ |\n+ | +--------------------Frog\n+ +------| (99.8/100)\n+ | +-----------------Turtle\n+ | +--| (85/72)\n+ | | | +------------------------Crocodile\n+ | | +----| (96.5/97)\n+ | | +------------------Bird\n+ | +--| (39/51)\n+ | | +---------------------------Sphenodon\n+ | +-----| (98.2/99)\n+ | | +-------------------------------Lizard\n+ +---------| (100/100)\n+ | +--------------Human\n+ | +--| (92.3/93)\n+ | | | +------Seal\n+ | | +--| (68.3/75)\n+ | | | +-----Cow\n+ | | +--| (99.7/100)\n+ | | +-------Whale\n+ | +----| (99.1/100)\n+ | | | +---Mouse\n+ | | +---------| (100/100)\n+ | | +------Rat\n+ +-----------| (100/100)\n+ | +--------------Platypus\n+ +--| (93/98)\n+ +-----------Opossum\n+\n+\n+From this figure, the branching patterns within reptiles are poorly supported (e.g. **Sphenodon** with SH-aLRT: 39%, UFBoot: 51% and **Turtle** with SH-aLRT: 85%, UFBoot: 72%) as well as the phylogenetic position of **Seal** within mammals (SH-aLRT: 68.3%, UFBoot: 75%). Other branches appear to be well supported.\n+ </help>\n+ <citations>\n+ <citation type="doi">10.1093/molbev/msu300</citation>\n+ <citation type="doi">10.1093/molbev/mst024</citation>\n+ </citations>\n+</tool>\n' |
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diff -r 000000000000 -r 05ee0a74faef test-data/example.phy --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example.phy Wed Nov 15 12:45:24 2017 -0500 |
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b'@@ -0,0 +1,18 @@\n+17 1998\n+LngfishAu CTCCCACACCCCAGGAACCAGCAGTGATTAACATTGAGCATAAGCGAAGCTTGACTCAGCCACCTCGGGCCGGTAAACCTCGTGCAGCCACCGCGGTTATACGAAGGACCCGATTGATGTCTAGGCGTAAAGGTGATTAATAGACTAATTAGAGTTAAAACCCCATCCAGCCGCGCATCCATAAAATCTAGACTACAACTACTTTCACGAAAGCTAAGATACAAACTGGGATTAGAT-CC-ACTTGCTCAGCCATAAACTTTGACTACTAAAAGGTCCGCCAGTACTACGAGGGCCAGCTTAAAACCCAAAGGACTTGCGGTGCCTACCCACCTAGAGGAGCCTGTTCTAGAACCGATAATCCACGTTAAACCTCACCCTTCTTGCCCCGTCTATATACCACCGTCGCCAGCTTACCCCGGGGTGAAATAAGCACAATTGTCAACCAAAAACGTCAGGTCGAGGTGTAGCGAATGAAGCGGAAGAATGGGCTACATTTTCTAAAGAATGAAAGACTAATGAAAAAGTCAGGGTGGATTTAGCAGTAAGAAAAACCAAGAATATTTCTGAAATTGGCCATGAGGGCGCACACACCGCCCGTCACTCTCCTCAAACTAAGAGGAGGCAAGTCGTAACATGGTAAGCGTACCGGAAGTCCTTGGAATTCAAATGTAGCTAAGAAGCACCTCCCTTACACCGAGGGCACATTGCAAAATCATTTGCTAAACTGCTAGCCTACAACACTATAATACCCAATAAACCATTTAACAGAGTATGGGCGACAGAAGTAGCGCCAAGTACCGCAAGGAAATGAATTAAGCCCAACAAAGTAGAGATATAAACTGTACCTTTTGCATCATGGTCTAGCAAGTCCCTGGGAAAGAGTGCTAAGTCAACCCCCGAAACTAGGCGAGCTACTTCGAGACAAGAGCCAACCCGTCCCTGTGGCAAAAGGGTGGGAAGATCTCCAAGTAGGGGTGACAGACCTAACGAGCCTAGTTATAGCTGGTTGCTCGGAAAGAATATAGTTCAACTTTAAACCCAACTAAGTAGGTTTAAAATATATTTAAAAGAGGGACAGCTCTTTTAAAAGGACACAACCTTAAAAATTGAAGATCATACGAATAAAGTGGCCTAAAAGCAGCCACCGTAGAGCGTACAGCTCAAGTCCTACAAATAATGAACTCAATCAACCCGAAAACTACTGGCTAACTTATAAAATATAAATAATGCTAGAATTAGAACAAGGGCCTTCTGCATAGGTGTAAACGGACATTGATAATTACGACACGAAGCTCATAAAACCAAGACCAAATCAACAATCAACACCACACAGTAATGCACGGAAAGGTTAAACAATGGAAGGAACTCGGCAACAAACCCCCCCTGTTTACCAAAAACATCGCCTCCTGCAAATATTAGAGTCCCGCCTGCCCTGTGACATTTCAACGGCCGCGGTATTTGACCGTGCGAAGGTAGGTAATCACTGTCTTAATAAAGACCTGTATGAATGGCCACGAGGGTTCAACTGTCTCCCCCATTTTACCAGTGAAATTGATCTCCGTGCAGAAGCGGGCATAAAACCAAAGACGAGAAGCCCTATGGAGCTTAAAACTGAAGTAGCTTTTAAAGCTAATAGCAAACTTGGTTGGGGCGACCGCGGAGAAAAAAAAATCCTCCGCAACAAGGGGACAGCCCAAAAAACAAAGATCCAGATAGATCAACGAACCAAGTTACCCTAGGGTAACAGCGCAACCTTTCTAAGAGTCCATATCGACGAAAGGGCTTACGACCTCGATGTTGGATCAGGACACCTAGTGGTGCAGCCGCTACTAAGGGTTTGTTTGTTCAACAATTAAATCCTACGTGATCTGAGTTCAGCAATCCAGGTCAGTTTCTATCTATGAT-TTTCTAGTACAAAGGACCGAAAAGTAGAGGAAGCCAAACTATCTCACCCACCCAAATTAACTAAAAATGGGGGCTATCTCCCAAGACGGA\n+LngfishSA CAACCACACCCCAGGAAACAGCAGTAATTAATCTTAGGCATAAGTGAAACTTGACCTAGTTATTAAAAATCGGCCAATCTCGTGCAGCCGCCGCGGTTATACGAGAGATTTTATTGATAAATTGGCGTATAGGTGATTAGAATACTTATTAAAATTTAACTTTAGCCAAGCTGCGCTTCCGCAAAATCATTATTAAATTATTCCTCACGAAAGCCAAGAAACAAACTAGGATTAGATCCCTACTTGCTTGGCTATAAACTATAGTTTTTAATCAACTCGCCAGGACTACTAGCACAAGCTAAAAACTCAAAGGACTTGCGGTGCCTACCCACCTAGAGGAGCCTGTCCTAAAACCGATAATCCACGTTTTACCTAACCCTTTTTGCCCAGCCTATATACCGCCGTCGCCAGCCAACCCCGGAGAAATATAGGCAAAATTACTAGTTAAATACGTCAGGTCGAGGTGTAGCATATGAAGTGGAAGGATGGGCTACATTTTCTGTAGAATGAATAGCAAATGAAAAAGCTGGGGTGGATTTAGCAGTAAAGAAAAATCATAATATTCCTGAAATTGGCCATGAGGGCGCACACACCGCCCGTCACTCTCCTCAAATATAGAGGAGGCAAGTCGTAACATGGTAAGTGTACCGGAAGGTGGCTTGGAACAAATGTAGCTAAGAAGCACCTCCCTTACGCTGAGGAAAGGCTGCAAAGCCATTTGCAAGTTTACCAGCCCATTACACTGTAATATTTTATAAACCATTTTTATTAGTATCGGCGAGAGAAAAAGCACTAAGTACCGTAAGGGAATTGAAAAAGCCAAAAAAAGCAAAGATTAATCCTGTACCTTTTGCATCATGGTCTAGCAAGATAACGGGAAAAAGAATTAAGTTAGCCCCCGAAACTAAACGAGCTACTTTGGGGCAAGAGCAAACCCTTCCATGTGGCAAAATGGTGGGATGACCCCCTAGTAGAGGTGAAAAGCCAACCGAGTTTAGAGATAGCTGGTTACTCGAAAAGAATATAGTTCATCTCTGGTTCAAAGACTTTTCAACTAGGAGATAATTAAAGGGGGGACAGCCCCTTTAATAGGATACATCCTTTAAAGAGGATAATAAAACTAATTTAGTGGCCTAAAAGCAGTCACCTTAGAGCGTAAAGCTCAAATTCCATAAATTTTATAACTAAAGATTCCCAAATTTATCGGTAAACTTATAAATTATAAATAATGCTAGAATGAGAACAAGAACTTTCTACACAAGTGTTAACGGACACTGACTGTTATGATAATTATCCTTTTATAACAAGAACATATAAATTAACAACTCAACACAGAAGTGTATAGAAAGGTTAAAAGATTGAAGGAACTCGGCAACAAGCCTCGCCTGTTTACCAAAAACATCGCCTTTTGTTCAAATAAAAGTACTGCCTGCCCTGTGACATTTCAACGGCCGCGGTATTTGACCGTGCGAAGGTAGGTAATCACTGTCTCAATTGGGACCTGTATGAATGGCAACGAGGGCTTGACTGTCTCCTTTATTCAACCAGTGAAATTGAGCTCTGTACAAAAGCAGAAATATTTACAAAGACGAGAAGCCCTGTGGAGCTTAAGACTAAAATAACAAAGCGAGCCCTTGTTAAATTTGGTTGGGGTGACCGCGGAGAAAAACTAAACCTCCGTAATAAGAGGACAGCTCTAAAAATAATTGATCCAGGAGATCATTGAACCAAGTTACCCCAGGGTAACAGCGCAACTCCCCTAAGAGCCCCAATCGACGGGGAGGTTTACGACCTCGATGTTGGATCAGGACACCTGATGGTGCAGCCGCTATCAAGGGTTTGTTTGTTCAACAATTAAATCCTACGTGATCTGAGTTCAGAAATCCAGGTCAGTTTCTATCTATGCTTTTCTTAGTACAAAGGACCAGAAAAGACGGGAAGTTTTCATAT'..b'CAGGACACAGCAGTAATAGAAATTAGTCATAAACGCAGTTTGAACAAGTCATCAAGAGTCGGTAAATTTCGTGCAGCCACCGCGGTCATACGATTGACTCAACTAACAATAAGGTGTAAAAGTGTTTAAAATTAAACATAAGATTAAAGTAGAACTAAACTGAGTCATAGTAAAGCTACGAAAAGCAATTGATACACGATAGCTAAGGTACAAACTGGGATTAGATCCCCACTTGCTTAGCCCTAAACTCAAGTTTAAACAAAACTCACCAGAACTACTAGCAACAGCTTAAAACTCAAAGGACTTGCGGTGCTTACCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATACACCTCACCTCTTTTGCCCTGTCTATATACCGCCATCGTCAGCCAACCCTAAGGAACAATAGGCGTAATCATTTCATAAAAACGTTAGGTCAAGGTGTAGCCTATAAGATGGAAAAATGGGCTACATTTTCTAGAACATCGAAAAATCATGAAAGAGTATTGGAGGATTTAGTAGTAAGCCAAGAATAGAGAGCTGACTAACTGGGCAATGAAGCAGCACACACCGCCCGTCACCCTCCTCATCCTAAGAGGAGATAAGTCGTAACAAGGTAAGCATACCGGAAGGTGGCTTGGATCAAATGTAGCTACAAAGCACTCAGCTTACACCTGAAAGATATTTTACAATCATTTGAGCCAACTCTAGCCCAAATAACTTAATCAAATACTAAAACATTCGCCCTAGTATAGGAGATAGAAGAGGAGCCTTGTACTGTGAAGGAAAATATAAAGCACAAAAAAGCCAGGATTTAACCCGTACCTTTTGCATAATGGTTTAGCTAGAACTTATAACAAAGAATTTAATTAAATCCCGAAACTAGATGAGCTACTATCGAGCATGAATCAACCCGTCTATGTTGCAAAATAGTGGGATGACTTTATAGTAGAGGTGAAAAATCAACCGGACCTAGTGATAGCTGGTTAGCCAAAAAGAATTTAGTTCAACAATAAGTTAATTAACCATAACTTATAAGTTATTCATAAGAGGGTCAGCCCTTATGAAAGGAAACAACCTCTAATAGAGATTTATTCTTTTACATAGTAGCCTAAAAGCAGCCATCAAAAAGCGTAAAGCTTAAACTTCTTAATCCCTTCTCTTAACTACCCTAAATAATATTGCTTAATCTATGCCCCATAGATAATGCTAAAATAAGAAACCAATTATTCTGCACTAGCTTAAACGGAGACTAATAATTACAGCATAATCTAAATATTAATAGAATTATTTTAACTGTTAACCCGACACAGGAGTGCATGGAAAGATTAAAAGGAGAAAGGAACTCGGCAAAGGATTTCGCCTGTTTACCAAAAACATCGCCTCTAGCATAAATTAGAGTCCTGCCTGCCCAGTGATTATTAAACGGCCGCGGTATCCGACCGTGCAAAGGTAGATAATCATTGTCTCATTAGAGACTAGTATGAATGGCGACGAAAATCCAACTGTCTCTTACTCCCAATCAGTGAAATTGCCCTCCGTGCAGAGACGGGGATAACACCAAAGACGAGAAGCCCTGTGGAGCTTTAAATTCTTTACACCCAAAAGCTCAATAAGAATTTTGGTTGGGGTGACCTCGGAGTACAACAAAACCTCTGAATGATAACTACAAGTTTAAAGCAAATAGACCCAAATGATCAAAGGACCAAGTTACCCCAGGGTAACAGCGCAACCTATTCAAGAGTTCATATCGACAATAGGGTTTACGACCTCGATGTTGGATCAGGACACCAAATGGTGCAGCCGCTATTAATGGTTCGTTTGTTCAACGATTAAATCCTACGTGATCTGAGTTCAGTAATCCAGGTCGGTTTCTATCTATGTTTCTCCTAGTCGAAAGGACCAGAGAAATCAGGAACTTAAAAGAACTCCAACTAAAATTTCATCTCAATGCGTTACCTTACTTCCTAGACGGT\n+Opossum CTTCCACACCCCAGGAGACAGCAGTGATTAAAATTAAGCATAAACGAAGTTTGACTAAGTCATTTAGGGTTGGTCAATTTCGTGCAGCCACCGCGGTCATACGATTAACCCAATTAATAATAAGGCGTAAAGGTGTTTAGTAATACAAATAAAGTTAATAATTAACTAAACTGCGTTCTAGTAAAATAATAAAAAAACACCGATACACGAAAACTAAGACACAAACTGGGATTAGATCCCCACTTGCTTAGTAATAAACTAAAATTTAAACAAAATTCGCCAGAACTACTAGCAATTGCTTAAAACTCAAAGGACTTGCGGTGCCCACCCACCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCAGACCTATCTTGCCCAGCCTATATACCGCCATCGTCAGCTAACCTTTAAGAATTATAAGCAAAATCAAAACATAAAAACGTTAGGTCAAGGTGTAGCATATGATAAGGAAGAATGGGCTACATTCTCTAGAGCATCGAATCAATATGAAAAAATGCTGGAGGATTTAGTAGTAAATTAAGAATAGAGAGCTAATTAATTAGGCAATAGGGCGGCACACACCGCCCGTCACCCTCCTCAACCTAAGAGGAGAAAAGTCGTAACACGGTAAGTGTACTGGAAAGTGACTTGGATCAAATGTAGCTGTAAAGCATTTAGTTTACACCTAAAAGATTTTCTAATACCATTTGAACTAACCACAGCCCAAATCAATCAAATATATTTTAAACCATTTTACCTAGTATAGGTGATAGAAAAGGAGCTATGTACCGCAAGGGAAAATATATAGTAATTAAAAGCAAAGATTAACTCTGTACCTTTTGCATAATGATTTAGCCAGTCCACGGAAAAAAGAATTTGCCCGACTCCCGAAATTAAGTGAGCTACTATAAGACATGAACCAACTCATCTATGTAGCAAAATAGTGAGAAGATTTTATAGTAGAAGTGAAAAACCTATCGAACTTAATGATAGCTGGTTATCCAAAAAGAATTTAGTTCAACTTTAAGCTAGCACACAATAACTTAAAAGTTAGTCAAAGAAGGGACAACTTCTTTGACAGTATACAAACTACATTAGAGATAATTAATACCACATCGTTGCTTAAAAGCAGCCATCAAAGAGCGTAAAGCTCAAACCATTTAATACCATAAAACTAAAACCCTAAATACTATTGATGATTCTATGTATTATAGATAATGCTAAAATTAGAATAAGACCGTTCTGCACAAGCCTAAATAACGACTAATAGTTACAAAATAATACATTCATCAACAGCCTTATACAATTTGTTAATCCAACACAGGTGTGCAAGGAAAGATATAAAAGAAAAAGGAACTCGGCAATGAACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATTAATTAGAGCACTGCCTGCCCAGTGAAAATTTAACGGCCGCGGTATCCGACCGTGCAAAGGTAGATAATCACTGTCTCAATAGGGACTTGTATGAATGGCAACGAGGGTTCAACTGTCTCTTTTTCTTAATCAATGAAATTGACCTCCGTGCAGAGGCGGGTATATTAATAAAGACGAGAAGCCCTGTGGAGCTTAAGAATAACTACACCCTAGGGAATAATTATTATTTTGGTTGGGGTGACCTCGGAGAACAAAAAAACCTCCGAATGTAGATAACTAATCCAAGGCAAATTGACCCAAATGATCAACGGAACAAGTTACCCCAGGGTAACAGCGCAACCTATTTAAGAGCCCATATCGAAAATAGGGTTTACGACCTCGATGTTGGATCAGGACACCTAATGGTGCAACCGCTATTAAAGGTTCGTTTGTTCAACGATTAAATCCTACGTGATCTGAGTTCAGAAATCCAGGTCGGTTTCTATCTATATTTCTCCCAGTCGAAAGGACCAGAGAAATAGGGAAATTATCATGCCCTCATAAATAAATATATCTAAAAATTTAAATTTATCCTCTAGATGAC\n' 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