Repository 'khmer_count_median'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_count_median

Changeset 8:06d1d91c67e5 (2021-03-23)
Previous changeset 7:77410799e8e9 (2019-12-18) Next changeset 9:b3d513c7093e (2024-06-17)
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 14ea2dc5ef36219c908ed64b256794711ce7b902"
modified:
count-median.xml
macros.xml
added:
test-data/test-abund-read-2.fq.gz
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diff -r 77410799e8e9 -r 06d1d91c67e5 count-median.xml
--- a/count-median.xml Wed Dec 18 16:02:57 2019 -0500
+++ b/count-median.xml Tue Mar 23 21:31:16 2021 +0000
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@@ -1,4 +1,4 @@
-<tool id="khmer_count_median" name="khmer: Count Median" version="@WRAPPER_VERSION@@TOOL_VERSION@">
+<tool id="khmer_count_median" name="khmer: Count Median" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Count the median/avg k-mer abundance for each sequence</description>
     <macros>
         <token name="@BINARY@">count-median.py</token>
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diff -r 77410799e8e9 -r 06d1d91c67e5 macros.xml
--- a/macros.xml Wed Dec 18 16:02:57 2019 -0500
+++ b/macros.xml Tue Mar 23 21:31:16 2021 +0000
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@@ -1,9 +1,10 @@
 <macros>
-    <token name="@WRAPPER_VERSION@">3.0.0a3</token>
-    <token name="@TOOL_VERSION@">+galaxy1</token>
+    <token name="@TOOL_VERSION@">3.0.0a3</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@PROFILE@">20.01</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@WRAPPER_VERSION@">khmer</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">khmer</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -75,7 +76,7 @@
             help="Put in order of precedence such as longest reads first." />
     </xml>
     <xml name="input_sequence_filename">
-        <param  name="input_sequence_filename" type="data" format="fasta,fastq"
+        <param  name="input_sequence_filename" type="data" format="fasta,fastq,fasta.gz,fastq.gz"
             label="Sequence in FASTA or FASTQ format" />
     </xml>
     <xml name="input_countgraph_filename">
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diff -r 77410799e8e9 -r 06d1d91c67e5 test-data/test-abund-read-2.fq.gz
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Binary file test-data/test-abund-read-2.fq.gz has changed