| Previous changeset 4:82fcdf530f87 (2020-05-04) Next changeset 6:764f076e9d52 (2020-07-23) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seurat commit 98e7666ee048ec249fd3f65854feab03168fadef" |
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modified:
seurat.xml |
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| diff -r 82fcdf530f87 -r 06ed31cf52ed seurat.xml --- a/seurat.xml Mon May 04 13:56:11 2020 -0400 +++ b/seurat.xml Mon Jun 08 17:40:51 2020 -0400 |
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| @@ -1,13 +1,20 @@ -<tool id="seurat" name="Seurat" version="@TOOL_VERSION@"> +<tool id="seurat" name="Seurat" version="@TOOL_VERSION@+galaxy1"> <description>- toolkit for exploration of single-cell RNA-seq data</description> <macros> <token name="@TOOL_VERSION@">3.1.5</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">r-seurat</requirement> - <requirement type="package" version="2.1">r-rmarkdown</requirement> - <!-- Need to pin pandoc due to https://github.com/rstudio/rmarkdown/issues/1740 --> - <requirement type="package" version="2.7.3">pandoc</requirement> + <requirement type="package" version="2.2">r-rmarkdown</requirement> + <!-- Need to pin R-base due to +*** caught segfault *** +address (nil), cause 'memory not mapped' + +Traceback: + 1: cairoVersion() + 2: grSoftVersion() + --> + <requirement type="package" version="3.6">r-base</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ #if "vln" in $meta.plots: |