| Previous changeset 5:40ca115438d2 (2021-06-16) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit ec66b5b0627e7cf15b6e67e90d82ba8e0743b761 |
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modified:
macros.xml metaquantome_sample.xml |
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| diff -r 40ca115438d2 -r 06f6826d380c macros.xml --- a/macros.xml Wed Jun 16 20:00:20 2021 +0000 +++ b/macros.xml Mon Mar 18 12:34:10 2024 +0000 |
| [ |
| @@ -1,32 +1,37 @@ <macros> <token name="@TOOL_VERSION@">2.0.2</token> <token name="@VERSION_SUFFIX@">0</token> + <xml name="xrefs"> + <xrefs> + <xref type="bio.tools">metaQuantome</xref> + </xrefs> + </xml> <xml name="requirements"> <requirements> - <requirement type="package" version="@TOOL_VERSION@">metaquantome</requirement> + <requirement type="package" version="@TOOL_VERSION@">metaquantome</requirement> <yield/> </requirements> </xml> <xml name="db"> - <param argument="db_tar" type="data" label="Database Archive File"/> + <param argument="db_tar" type="data" label="Database Archive File"/> </xml> <xml name="ONTOLOGY_ARGS"> - <conditional name="ontology_args"> - <param name="ontology" type="select" label="Ontology"> - <option value="go">Gene Ontology (GO terms)</option> - <option value="ec">Enzyme Commission (EC) numbers</option> - <option value="cog">Clusters of Orthologous Groups (COG categories)</option> - </param> - <when value="go"> - <param argument="--slim_down" type="boolean" label="Use slim GO"/> - </when> - <when value="ec"> - <!-- do nothing --> - </when> - <when value="cog"> - <!-- do nothing --> - </when> - </conditional> + <conditional name="ontology_args"> + <param name="ontology" type="select" label="Ontology"> + <option value="go">Gene Ontology (GO terms)</option> + <option value="ec">Enzyme Commission (EC) numbers</option> + <option value="cog">Clusters of Orthologous Groups (COG categories)</option> + </param> + <when value="go"> + <param argument="--slim_down" type="boolean" label="Use slim GO"/> + </when> + <when value="ec"> + <!-- do nothing --> + </when> + <when value="cog"> + <!-- do nothing --> + </when> + </conditional> </xml> <token name="@COMMON_PARAMS@"><![CDATA[ --samps '$samps' @@ -40,12 +45,12 @@ ]]> </token> <xml name="SAMPS"> - <param name="samps" type="data" format="tabular" label="Samples file" - help="must be created by 'metaQuantome: create samples file'"/> + <param name="samps" type="data" format="tabular" label="Samples file" help="must be created by 'metaQuantome: create samples file'"/> </xml> <xml name="citations"> <citations> - <yield /> + <citation type="doi">10.1021/ACS.JPROTEOME.0C00960</citation> + <yield/> </citations> </xml> </macros> |
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| diff -r 40ca115438d2 -r 06f6826d380c metaquantome_sample.xml --- a/metaquantome_sample.xml Wed Jun 16 20:00:20 2021 +0000 +++ b/metaquantome_sample.xml Mon Mar 18 12:34:10 2024 +0000 |
| [ |
| @@ -3,6 +3,7 @@ <macros> <import>macros.xml</import> </macros> + <expand macro="xrefs"/> <command detect_errors="exit_code"><![CDATA[ #set $samp_header = 'group\tcolnames' echo -e '${samp_header}' > samp_file.tab; |