| Previous changeset 1:8e5feca6a518 (2017-10-20) Next changeset 3:cb3557cabc7b (2018-05-24) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 39a5f30a013c6d71ea84807b72511e3aa4bab147 |
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modified:
crossmap_bam.xml macros.xml test-data/cached_locally/liftOver.loc |
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| diff -r 8e5feca6a518 -r 083774cc8472 crossmap_bam.xml --- a/crossmap_bam.xml Fri Oct 20 02:48:57 2017 -0400 +++ b/crossmap_bam.xml Fri Oct 20 11:33:02 2017 -0400 |
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| @@ -50,7 +50,7 @@ <test> <param name="index_source" value="cached"/> - <param name="input" value="test_bam_01_input_a.bam" ftype="bam"/> + <param name="input" value="test_bam_01_input_a.bam" ftype="bam" dbkey="hg18"/> <param name="include_fails" value="False"/> <output name="output" file="test_bam_01_output_a.bam" compare="diff" lines_diff="8"/> |
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| diff -r 8e5feca6a518 -r 083774cc8472 macros.xml --- a/macros.xml Fri Oct 20 02:48:57 2017 -0400 +++ b/macros.xml Fri Oct 20 11:33:02 2017 -0400 |
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| @@ -28,9 +28,7 @@ <when value="cached"> <param name="input_chain" type="select" label="Lift Over To"> <options from_data_table="liftOver"> - <!-- <filter type="data_meta" ref="input" key="dbkey" column="0"/> - --> </options> </param> </when> |
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| diff -r 8e5feca6a518 -r 083774cc8472 test-data/cached_locally/liftOver.loc --- a/test-data/cached_locally/liftOver.loc Fri Oct 20 02:48:57 2017 -0400 +++ b/test-data/cached_locally/liftOver.loc Fri Oct 20 11:33:02 2017 -0400 |
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| @@ -29,4 +29,4 @@ #anoCar1 hg18 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain #...etc... -A B ${__HERE__}/aToB.over.chain +hg18 hg19 ${__HERE__}/aToB.over.chain |