| Previous changeset 5:7d2a81d29ca4 (2014-02-12) Next changeset 7:08b003ee9db7 (2015-04-22) |
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Commit message:
Uploaded |
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modified:
table_annovar.xml |
| b |
| diff -r 7d2a81d29ca4 -r 091154194ce8 table_annovar.xml --- a/table_annovar.xml Wed Feb 12 16:06:05 2014 -0500 +++ b/table_annovar.xml Wed Feb 12 16:32:16 2014 -0500 |
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| @@ -40,7 +40,7 @@ ; table_annovar.pl input.avinput ${__get_data_table_entry__('annovar_indexes', 'dbkey', $input.dbkey, 'path')} -protocol ${protocol} -operation ${operation} -nastring NA -buildver ${input.dbkey} --outfile output ## Process annotated table to remove "NA" strings from numerical columns and copy to output. - ; cat output.${input.dbkey}_multianno.txt | \$SCRIPT_PATH/replace_NA.py > ${output} + ; cat output.${input.dbkey}_multianno.txt | python \$SCRIPT_PATH/replace_NA.py > ${output} </command> <inputs> |