| Previous changeset 3:cc9a18dd41c9 (2018-05-08) Next changeset 5:ec0b5076173a (2020-01-30) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fasta_nucleotide_changer commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a |
|
modified:
fasta_nucleotide_changer.xml macros.xml |
| b |
| diff -r cc9a18dd41c9 -r 091ca73f5804 fasta_nucleotide_changer.xml --- a/fasta_nucleotide_changer.xml Tue May 08 13:26:01 2018 -0400 +++ b/fasta_nucleotide_changer.xml Wed Aug 22 11:04:20 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="cshl_fasta_nucleotides_changer" version="1.0.1" name="RNA/DNA" > +<tool id="cshl_fasta_nucleotides_changer" version="1.0.2" name="RNA/DNA" > <description>converter</description> <macros> <import>macros.xml</import> @@ -9,6 +9,7 @@ -$mode -v -o '$output' +@GZIP@ ]]></command> <inputs> <expand macro="fasta_input" /> |
| b |
| diff -r cc9a18dd41c9 -r 091ca73f5804 macros.xml --- a/macros.xml Tue May 08 13:26:01 2018 -0400 +++ b/macros.xml Wed Aug 22 11:04:20 2018 -0400 |
| [ |
| @@ -2,7 +2,7 @@ <macros> <token name="@CATS@"> #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - zcat -f '$input' | + gunzip -c -f '$input' | #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): bzcat -f '$input' | #else: @@ -18,6 +18,13 @@ #end if ]]> </token> + <token name="@GZIP@"> + <![CDATA[ + #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): + -z + #end if + ]]> + </token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">fastx_toolkit</requirement> |