| Previous changeset 3:da5aae7550b3 (2020-05-07) Next changeset 5:6ae3a402b9af (2020-05-24) |
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Commit message:
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy-sv commit 07c73df696d6d80e03f03232603d713882131625" |
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modified:
lumpy.xml pairend_distro.py |
| b |
| diff -r da5aae7550b3 -r 093bb151a0a8 lumpy.xml --- a/lumpy.xml Thu May 07 19:38:14 2020 -0400 +++ b/lumpy.xml Mon May 11 19:51:38 2020 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="lumpy" name="lumpy-sv" version="1.2.0"> +<tool id="lumpy" name="lumpy-sv" version="1.2.1"> <description>find structural variants</description> <requirements> <requirement type="package" version="0.2.13">lumpy-sv</requirement> |
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| diff -r da5aae7550b3 -r 093bb151a0a8 pairend_distro.py --- a/pairend_distro.py Thu May 07 19:38:14 2020 -0400 +++ b/pairend_distro.py Mon May 11 19:51:38 2020 -0400 |
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| @@ -62,11 +62,11 @@ L = [] c = 0 -for l in sys.stdin: +for length in sys.stdin: if c >= options.N: break - A = l.rstrip().split('\t') + A = length.rstrip().split('\t') flag = int(A[SAM_FLAG]) refname = A[SAM_REFNAME] mate_refname = A[SAM_MATE_REFNAME] |