| Previous changeset 9:6aafa0ced802 (2013-07-30) Next changeset 11:98f8431dab44 (2014-06-13) |
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Commit message:
Uploaded v0.0.9, updated citation information |
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modified:
blastxml_to_top_descr/README.rst blastxml_to_top_descr/blastxml_to_top_descr.xml blastxml_to_top_descr/repository_dependencies.xml |
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| diff -r 6aafa0ced802 -r 09a68a90d552 blastxml_to_top_descr/README.rst --- a/blastxml_to_top_descr/README.rst Tue Jul 30 08:07:28 2013 -0400 +++ b/blastxml_to_top_descr/README.rst Wed Sep 18 06:07:53 2013 -0400 |
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| @@ -39,7 +39,7 @@ You will also need to modify the tools_conf.xml file to tell Galaxy to offer the tool. e.g. next to the NCBI BLAST+ tools. Simply add the line:: - <tool file="filters/seq_select_by_id.xml" /> + <tool file="ncbi_blast_plus/blastxml_to_top_descr.xml" /> To run the tool's tests, also add this line to tools_conf.xml.sample then:: @@ -63,6 +63,7 @@ - Tweak dependency on blast_datatypes to also work on Test Tool Shed - Adopt standard MIT License. v0.0.8 - Development moved to GitHub, https://github.com/peterjc/galaxy_blast +v0.0.9 - Updated citation information (Cock et al. 2013). ======= ====================================================================== |
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| diff -r 6aafa0ced802 -r 09a68a90d552 blastxml_to_top_descr/blastxml_to_top_descr.xml --- a/blastxml_to_top_descr/blastxml_to_top_descr.xml Tue Jul 30 08:07:28 2013 -0400 +++ b/blastxml_to_top_descr/blastxml_to_top_descr.xml Wed Sep 18 06:07:53 2013 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.8"> +<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.9"> <description>Make a table from BLAST XML</description> <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command> <command interpreter="python"> @@ -26,7 +26,7 @@ </test> </tests> <help> - + **What it does** NCBI BLAST+ (and the older NCBI 'legacy' BLAST) can output in a range of @@ -49,7 +49,15 @@ to spot some problems (e.g. bacterial contaimination could be very obvious). -**Citation** +**References** + +If you use this Galaxy tool in work leading to a scientific publication please +cite: + +Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013). +Galaxy tools and workflows for sequence analysis with applications +in molecular plant pathology. PeerJ 1:e167 +http://dx.doi.org/10.7717/peerj.167 This wrapper is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr |
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| diff -r 6aafa0ced802 -r 09a68a90d552 blastxml_to_top_descr/repository_dependencies.xml --- a/blastxml_to_top_descr/repository_dependencies.xml Tue Jul 30 08:07:28 2013 -0400 +++ b/blastxml_to_top_descr/repository_dependencies.xml Wed Sep 18 06:07:53 2013 -0400 |
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| @@ -1,5 +1,4 @@ <?xml version="1.0"?> -<repositories description="This requires the BLAST datatype definitions (e.g. the BLAST XML format)."> -<!-- Revision 4:f9a7783ed7b6 on the main (and test) tool shed is v0.0.14 which added BLAST databases --> -<repository changeset_revision="f9a7783ed7b6" name="blast_datatypes" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> +<repositories description="Requires BLAST XML and database datatype definitions."> +<repository changeset_revision="b3a3ba0c1d47" name="blast_datatypes" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> </repositories> |