| Previous changeset 1:ba271365095e (2017-10-11) Next changeset 3:29faaa849e41 (2017-12-22) |
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Commit message:
planemo upload for repository https://github.com/phac-nml/bio_hansel commit d5a37b4f48178ee8179883d0f6cf550824e975f0 |
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modified:
bio_hansel.xml |
| b |
| diff -r ba271365095e -r 09ebaa5192ab bio_hansel.xml --- a/bio_hansel.xml Wed Oct 11 12:35:50 2017 -0400 +++ b/bio_hansel.xml Fri Oct 27 12:40:00 2017 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="bio_hansel" name="Salmonella Subtyping" version="0.1.2"> +<tool id="bio_hansel" name="Salmonella Subtyping" version="0.1.3"> <description>Genome assemblies and/or whole-genome sequencing readset</description> <requirements> <requirement type="package" version="0.1.0">bio_hansel</requirement> @@ -13,8 +13,8 @@ #elif $data_type.type == "collection": - ln -s '$data_type.fastq_input1.forward' '$data_type.fastq_input1.forward.name' && - ln -s '$data_type.fastq_input1.reverse' '$data_type.fastq_input1.reverse.name' && + ln -s '$data_type.fastq_input1.forward' '$data_type.fastq_input1.name'_1 && + ln -s '$data_type.fastq_input1.reverse' '$data_type.fastq_input1.name'_2 && #elif $data_type.type == "single": @@ -70,7 +70,7 @@ '$data_type.fastq_input1.name' #elif $data_type.type =="collection": - -p '$data_type.fastq_input1.forward.name' '$data_type.fastq_input1.reverse.name' + -p '$data_type.fastq_input1.name'_1 '$data_type.fastq_input1.name'_2 #elif $data_type.type =="paired": -p '$data_type.fastq_input1.name' '$data_type.fastq_input2.name' |