| Previous changeset 2:e53f19161c59 (2019-10-15) Next changeset 4:917f8e439160 (2019-11-06) |
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Commit message:
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit cf916eb507ee224812b64663c1d6020eb59eb88c" |
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modified:
alevin.xml |
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| diff -r e53f19161c59 -r 0a5258e41227 alevin.xml --- a/alevin.xml Tue Oct 15 12:02:30 2019 -0400 +++ b/alevin.xml Thu Oct 17 17:05:18 2019 -0400 |
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| @@ -7,7 +7,7 @@ <command detect_errors="exit_code"><![CDATA[ mkdir ./index && mkdir ./output - #if '${refTranscriptSource.TranscriptSource}' != "indexed": + #if $refTranscriptSource.TranscriptSource != "indexed": && salmon index -i ./index --kmerLen '${refTranscriptSource.s_index.kmer}' --gencode @@ -149,7 +149,7 @@ </inputs> <outputs> <data name="quants_mat.tsv" label="quants_mat.tsv" format="txt" from_work_dir="quants_mat.tsv"> - <filter>not optional["dumpMtx"]</filter> + <filter>optional["dumpMtx"] is not True</filter> </data> <data name="quants_mat.mtx.gz" label="quants_mat.mtx.gz" format="mtx" from_work_dir="output/alevin/quants_mat.mtx.gz"> <filter>optional["dumpMtx"]</filter> |