| Previous changeset 65:ba2b17e5792b (2017-06-08) Next changeset 67:05b7f688c247 (2017-06-09) |
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Commit message:
Uploaded 20170609 |
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modified:
loadandplot.xml plotwithscale.xml testandplot.xml |
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added:
._loadandplot.R ._plotwithscale.R ._testandplot.R test-data/._.DS_Store test-data/input/._Controls_regions.bed test-data/input/._Elements1_regions.bed test-data/input/._Elements2_regions.bed test-data/input/._Elements3_regions.bed test-data/input/._Feature1.bed test-data/input/._Feature2.bed test-data/input/._features.header.bed.txt test-data/input/._regions.header.txt test-data/output_loadandplot/._iwtomics.loadandplot.RData test-data/output_loadandplot/._iwtomics.loadandplot.features.txt test-data/output_loadandplot/._iwtomics.loadandplot.pdf test-data/output_loadandplot/._iwtomics.loadandplot.regions.txt test-data/output_plotwithscale/._iwtomics.plotwithscale.adjustedpvalue.txt test-data/output_plotwithscale/._iwtomics.plotwithscale.iwtomicstestresults.pdf test-data/output_plotwithscale/._iwtomics.plotwithscale.summaryplot.pdf test-data/output_testandplot/._iwtomics.testandplot.RData test-data/output_testandplot/._iwtomics.testandplot.adjustedpvalue.matrix.txt test-data/output_testandplot/._iwtomics.testandplot.iwtomicstestresults.pdf test-data/output_testandplot/._iwtomics.testandplot.selectedfeatures.txt test-data/output_testandplot/._iwtomics.testandplot.summaryplot.pdf test-data/output_testandplot/._iwtomics.testandplot.tests.txt |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 ._loadandplot.R |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 ._plotwithscale.R |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 ._testandplot.R |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 loadandplot.xml --- a/loadandplot.xml Thu Jun 08 17:40:15 2017 -0400 +++ b/loadandplot.xml Fri Jun 09 11:57:33 2017 -0400 |
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| @@ -18,7 +18,7 @@ <exit_code range="35" level="fatal" description="Windows in feature files do not cover all regions in region files." /> <exit_code range="36" level="fatal" description="All windows in a feature file must have the same size." /> <exit_code range="40" level="fatal" description="An error has occurred smoothing the data. Please try again." /> - <regex match="Error" level="fatal" description="An error has occurred. Please try again." /> + <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." /> </stdio> <command> |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 plotwithscale.xml --- a/plotwithscale.xml Thu Jun 08 17:40:15 2017 -0400 +++ b/plotwithscale.xml Fri Jun 09 11:57:33 2017 -0400 |
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| @@ -12,7 +12,7 @@ <exit_code range="40" level="fatal" description="Scale threshold too high." /> <exit_code range="50" level="fatal" description="Group by 'test' but selected features with different resolution." /> <exit_code range="60" level="fatal" description="Summary plot error. Please try again." /> - <regex match="Error" level="fatal" description="An error has occurred. Please try again." /> + <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." /> </stdio> <command> |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 test-data/._.DS_Store |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 test-data/input/._Controls_regions.bed |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 test-data/input/._Elements1_regions.bed |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 test-data/input/._Elements2_regions.bed |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 test-data/input/._Elements3_regions.bed |
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| diff -r ba2b17e5792b -r 0b07bbe59b14 testandplot.xml --- a/testandplot.xml Thu Jun 08 17:40:15 2017 -0400 +++ b/testandplot.xml Fri Jun 09 11:57:33 2017 -0400 |
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| @@ -10,7 +10,7 @@ <exit_code range="20" level="fatal" description="Wrong feature ids." /> <exit_code range="30" level="fatal" description="Same test repeated multiple times." /> <exit_code range="40" level="fatal" description="Testing error." /> - <regex match="Error" level="fatal" description="An error has occurred. Please try again." /> + <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." /> </stdio> <command> |