| Previous changeset 3:422a5c9f3583 (2022-10-24) |
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Commit message:
planemo upload commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty |
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modified:
rpranker.xml test-data/lycopene_ranked_pathways.csv |
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| diff -r 422a5c9f3583 -r 0b6c315489e4 rpranker.xml --- a/rpranker.xml Mon Oct 24 10:14:47 2022 +0000 +++ b/rpranker.xml Fri Nov 18 16:04:21 2022 +0000 |
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| @@ -2,7 +2,7 @@ <description>Rank heterologous pathways according to their global score</description> <macros> <token name="@VERSION_SUFFIX@">0</token> - <token name="@TOOL_VERSION@">5.13.1</token> + <token name="@TOOL_VERSION@">6.0.1</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> @@ -12,10 +12,17 @@ <regex match="ERROR" level="fatal" /> </stdio> <command detect_errors="exit_code"><![CDATA[ + #for $file in $pathway_collection + ln -s $file $file.name && + #end for + python -m rptools.rprank --pathways - #set files = '" "'.join([str($file) for $file in $pathway_collection]) - "${files}" + + #for $file in $pathway_collection + $file.name + #end for + > '$sorted_pathways' ]]></command> <inputs> |
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| diff -r 422a5c9f3583 -r 0b6c315489e4 test-data/lycopene_ranked_pathways.csv --- a/test-data/lycopene_ranked_pathways.csv Mon Oct 24 10:14:47 2022 +0000 +++ b/test-data/lycopene_ranked_pathways.csv Fri Nov 18 16:04:21 2022 +0000 |
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| @@ -1,10 +1,10 @@ #Name,Score -002_0001,0.9892438888549804 -003_0261,0.9863117098808288 -002_0011,0.9851486444473266 -002_0021,0.9851486444473266 -001_0001,0.9850856959819794 -001_0006,0.9850397169589996 -001_0011,0.9850397169589996 -003_0131,0.980250358581543 -003_0001,0.975385755300522 +rp_002_0001.xml,0.9892438888549804 +rp_003_0261.xml,0.9863117098808288 +rp_002_0011.xml,0.9851486444473266 +rp_002_0021.xml,0.9851486444473266 +rp_001_0001.xml,0.9850856959819794 +rp_001_0006.xml,0.9850397169589996 +rp_001_0011.xml,0.9850397169589996 +rp_003_0131.xml,0.980250358581543 +rp_003_0001.xml,0.975385755300522 |