| Previous changeset 6:86dc721b6860 (2016-06-22) Next changeset 8:0eae27b15aa0 (2016-07-14) |
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Commit message:
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/workflows/amrplusplus commit 40ce29d55ffc7141cb9a62c4d9bd03cd8fc17915-dirty |
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modified:
amrplusplus_workflow.ga |
| b |
| diff -r 86dc721b6860 -r 0b7210ad9187 amrplusplus_workflow.ga --- a/amrplusplus_workflow.ga Wed Jun 22 00:48:57 2016 -0400 +++ b/amrplusplus_workflow.ga Sat Jun 25 17:17:42 2016 -0400 |
| [ |
| b'@@ -27,8 +27,14 @@\n "tool_state": "{\\"name\\": \\"FASTQ Forward\\"}", \n "tool_version": null, \n "type": "data_input", \n- "uuid": "9c1f5852-9697-40e2-bc6f-7ac65ad647ce", \n- "workflow_outputs": []\n+ "uuid": "f1e841db-6f7a-4f32-bd87-8d0d934c4cc1", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "output", \n+ "uuid": "ad47f164-7e7a-4d22-a967-551b2378427a"\n+ }\n+ ]\n }, \n "1": {\n "annotation": "", \n@@ -53,8 +59,14 @@\n "tool_state": "{\\"name\\": \\"FASTQ Reverse\\"}", \n "tool_version": null, \n "type": "data_input", \n- "uuid": "030bf3fc-ee71-46c4-bfcf-8d963c04a478", \n- "workflow_outputs": []\n+ "uuid": "a24ee7c0-b919-4426-8866-7d9939536e12", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "output", \n+ "uuid": "edba093d-cdda-4530-916e-a566d94e2040"\n+ }\n+ ]\n }, \n "2": {\n "annotation": "", \n@@ -79,8 +91,14 @@\n "tool_state": "{\\"name\\": \\"Host Genome\\"}", \n "tool_version": null, \n "type": "data_input", \n- "uuid": "95f884fc-215e-4d54-8212-e43be8a779b5", \n- "workflow_outputs": []\n+ "uuid": "96c8f450-cb64-4641-884a-c1dabceeff5d", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "output", \n+ "uuid": "2fb141c8-5d0b-4044-906d-adaa7a07f66e"\n+ }\n+ ]\n }, \n "3": {\n "annotation": "", \n@@ -105,8 +123,14 @@\n "tool_state": "{\\"name\\": \\"AMR Database\\"}", \n "tool_version": null, \n "type": "data_input", \n- "uuid": "8a65e391-b837-41ef-9575-bedf5294da9e", \n- "workflow_outputs": []\n+ "uuid": "2615ede9-3d0a-422b-b04d-829157475d47", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "output", \n+ "uuid": "32fcc9ba-8864-4fa7-a337-917a9612844a"\n+ }\n+ ]\n }, \n "4": {\n "annotation": "", \n@@ -197,78 +221,25 @@\n "tool_state": "{\\"operations\\": \\"[{\\\\\\"__index__\\\\\\": 0, \\\\\\"operation\\\\\\": {\\\\\\"window_size\\\\\\": \\\\\\"4\\\\\\", \\\\\\"name\\\\\\": \\\\\\"SLIDINGWINDOW\\\\\\", \\\\\\"__current_case__\\\\\\": 0, \\\\\\"required_quality\\\\\\": \\\\\\"20\\\\\\"}}]\\", \\"__page__\\": 0, \\"__rerun_remap_job_id__\\": null, \\"paired_end\\": \\"{\\\\\\"is_paired_end\\\\\\": \\\\\\"true\\\\\\", \\\\\\"paired_input_type_conditional\\\\\\": {\\\\\\"paired_input_type\\\\\\": \\\\\\"pair_of_files\\\\\\", \\\\\\"fastq_r1_in\\\\\\": {\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}, \\\\\\"__current_case__\\\\\\": 0, \\\\\\"fastq_r2_in\\\\\\": {\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}}, \\\\\\"__current_case__\\\\\\": 1}\\", \\"illuminaclip\\": \\"{\\\\\\"do_illuminaclip\\\\\\": \\\\\\"false\\\\\\", \\\\\\"__current_case__\\\\\\": 1}\\"}", \n "tool_version": "0.32.3", \n "type": "tool", \n- "uuid": "0d5a87ee-c6a3-4bd1-b416-226d0e4783ab", \n+ "uuid": "c943ae63-aa6c-4d42-9088-b08335b8b6c6", \n "workflow_outputs": [\n {\n "label": null, \n "output_name": "fastq_out_r1_paired", \n- "uuid": "6e06861e-a08e-4fbf-bdd6-daa51499d669"\n+ "uuid": "e5cb04a2-09b6-41e5-b93d-54c4c6c8e488"\n }, \n {\n "label": null, \n "output_name": "fastq_out_r2_paired", \n- "uuid": "1b2d0dd4-d1ce-4886-b300-8df03d3918fa"\n+ "uuid": "ada191c5-9f20-4052-aa5e-03f73f9587ad"\n }\n ]\n }, \n "'..b' }, \n@@ -524,12 +495,69 @@\n "tool_state": "{\\"header\\": \\"\\\\\\"-h\\\\\\"\\", \\"__rerun_remap_job_id__\\": null, \\"input1\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"__page__\\": 0}", \n "tool_version": "2.0", \n "type": "tool", \n- "uuid": "5076f37b-5da6-44a3-a3b2-f4172d547dc3", \n+ "uuid": "5196c387-3fad-46dc-9e6f-63af7ffae562", \n "workflow_outputs": [\n {\n "label": null, \n "output_name": "output1", \n- "uuid": "4b52f2d0-1a66-408a-bc99-0da79cc8542f"\n+ "uuid": "a4536845-4aaa-4a65-bc1b-e235f762a742"\n+ }\n+ ]\n+ }, \n+ "10": {\n+ "annotation": "", \n+ "content_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0", \n+ "id": 10, \n+ "input_connections": {\n+ "input1": {\n+ "id": 3, \n+ "output_name": "output"\n+ }, \n+ "sam_type|sampe_input2": {\n+ "id": 9, \n+ "output_name": "output1"\n+ }\n+ }, \n+ "inputs": [\n+ {\n+ "description": "runtime parameter for tool Snip Finder", \n+ "name": "sam_type"\n+ }, \n+ {\n+ "description": "runtime parameter for tool Snip Finder", \n+ "name": "input1"\n+ }\n+ ], \n+ "label": null, \n+ "name": "Snip Finder", \n+ "outputs": [\n+ {\n+ "name": "output1", \n+ "type": "tabular"\n+ }\n+ ], \n+ "position": {\n+ "left": 1368, \n+ "top": 551\n+ }, \n+ "post_job_actions": {}, \n+ "tool_errors": null, \n+ "tool_id": "toolshed.g2.bx.psu.edu/repos/chrisd/snipfinder/snp_caller/0.1.0", \n+ "tool_shed_repository": {\n+ "changeset_revision": "d9be5a7e70f5", \n+ "name": "snipfinder", \n+ "owner": "chrisd", \n+ "tool_shed": "toolshed.g2.bx.psu.edu"\n+ }, \n+ "tool_state": "{\\"sam_type\\": \\"{\\\\\\"best\\\\\\": \\\\\\"false\\\\\\", \\\\\\"mode\\\\\\": \\\\\\"paired_end\\\\\\", \\\\\\"__current_case__\\\\\\": 1, \\\\\\"sampe_input2\\\\\\": {\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}}\\", \\"__page__\\": 0, \\"__rerun_remap_job_id__\\": null, \\"input1\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\"}", \n+ "tool_version": "0.1.0", \n+ "type": "tool", \n+ "uuid": "3c0b1793-8625-4529-a406-6ffa822b38ab", \n+ "workflow_outputs": [\n+ {\n+ "label": null, \n+ "output_name": "output1", \n+ "uuid": "b58e3331-4b37-49d9-b311-1120ca9606e6"\n }\n ]\n }, \n@@ -543,7 +571,7 @@\n "output_name": "output"\n }, \n "input2": {\n- "id": 10, \n+ "id": 9, \n "output_name": "output1"\n }\n }, \n@@ -587,9 +615,9 @@\n "tool_state": "{\\"input2\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"__page__\\": 0, \\"input1\\": \\"{\\\\\\"__class__\\\\\\": \\\\\\"RuntimeValue\\\\\\"}\\", \\"min\\": \\"\\\\\\"5\\\\\\"\\", \\"max\\": \\"\\\\\\"100\\\\\\"\\", \\"__rerun_remap_job_id__\\": null, \\"samples\\": \\"\\\\\\"1\\\\\\"\\", \\"skip\\": \\"\\\\\\"5\\\\\\"\\", \\"threshold\\": \\"\\\\\\"80\\\\\\"\\"}", \n "tool_version": "0.1.0", \n "type": "tool", \n- "uuid": "a79d4e7c-dc9c-45fc-bc5f-e07c8289dc6c", \n+ "uuid": "0907193f-3458-40a1-b0ba-beac3998da62", \n "workflow_outputs": []\n }\n }, \n- "uuid": "882a41f1-f16c-4e06-a19b-21a5ffc1fd36"\n-}\n+ "uuid": "5f790d55-b08b-45e8-8471-005678ec4eef"\n+}\n\\ No newline at end of file\n' |