| Previous changeset 31:241aa6141cac (2017-11-28) Next changeset 33:46d7549c1a05 (2017-11-28) |
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Commit message:
Uploaded |
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modified:
bin/html.pm |
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| diff -r 241aa6141cac -r 0cffda6c3d1a bin/html.pm --- a/bin/html.pm Tue Nov 28 08:54:52 2017 -0500 +++ b/bin/html.pm Tue Nov 28 09:08:02 2017 -0500 |
| [ |
| @@ -66,10 +66,10 @@ footer($h); close $h; - open $h, '>', $prefix.'-exons.html' || die "cannot create $prefix-exons.html $!\n"; + open $h, '>', $prefix.'-transcripts.html' || die "cannot create $prefix-transcripts.html $!\n"; header($h); navbar ( $h, $list_mainTabP, $current ); - fut($h,'Exons',$Hex); + fut($h,'transcripts',$Hex); footer($h); close $h; } @@ -187,21 +187,21 @@ reads of size between $min and $max<br>with no mi, sn, t and r RNAs <p><a class=\"btn\" href=\"$name-bonafide_reads-genome.html\">Genome</a></p> <p><a class=\"btn\" href=\"$name-bonafide_reads-TEs.html\">TE</a></p> - <p><a class=\"btn\" href=\"$name-bonafide_reads-exons.html\">Exons</a></p> + <p><a class=\"btn\" href=\"$name-bonafide_reads-transcripts.html\">transcripts</a></p> <div class=\"row-fluid\"> <div class=\"span6\"> <h2>siRNAs</h2> bonafide reads of size between $simin and $simax <p><a class=\"btn\" href=\"$name-siRNAs-genome.html\">Genome</a></p> <p><a class=\"btn\" href=\"$name-siRNAs-TEs.html\">TE</a></p> - <p><a class=\"btn\" href=\"$name-siRNAs-exons.html\">Exons</a></p> + <p><a class=\"btn\" href=\"$name-siRNAs-transcripts.html\">transcripts</a></p> </div> <div class=\"span6\"> <h2>piRNAs</h2> bonafide reads of size between $pimin and $pimax <p><a class=\"btn\" href=\"$name-piRNAs-genome.html\">Genome</a></p> <p><a class=\"btn\" href=\"$name-piRNAs-TEs.html\">TE</a></p> - <p><a class=\"btn\" href=\"$name-piRNAs-exons.html\">Exons</a></p> + <p><a class=\"btn\" href=\"$name-piRNAs-transcripts.html\">transcripts</a></p> </div> </div> </div> @@ -209,7 +209,7 @@ <h2>miRNAs</h2> <p><a class=\"btn\" href=\"$name-miRNAs-genome.html\">Genome</a></p> <p><a class=\"btn\" href=\"$name-miRNAs-TEs.html\">TE</a></p> - <p><a class=\"btn\" href=\"$name-miRNAs-exons.html\">Exons</a></p> + <p><a class=\"btn\" href=\"$name-miRNAs-transcripts.html\">transcripts</a></p> </div> </div> </div> @@ -237,9 +237,9 @@ elsif ( $f =~ /genome_minus\.bedgraph$/) { $HG{'bedgraph minus strand'} = $f; } elsif ( $f =~ /TEs_plus\.bedgraph$/) { $HTE{'bedgraph plus strand'} = $f; } elsif ( $f =~ /TEs_minus\.bedgraph$/) { $HTE{'bedgraph minus strand'} = $f; } - elsif ( $f =~ /exons_sorted\.bam$/) { $Hex{'exons mappers (sorted bam)'} = $f;} - elsif ( $f =~ /exons_unique_sorted\.bam$/) { $Hex{'exons unique mappers (sorted bam)'} = $f;} - elsif ( $f =~ /exons_reads_counts\.txt$/) { $Hex{'read number per exon (txt)'} = $f;} + elsif ( $f =~ /transcripts_sorted\.bam$/) { $Hex{'transcripts mappers (sorted bam)'} = $f;} + elsif ( $f =~ /transcripts_unique_sorted\.bam$/) { $Hex{'transcripts unique mappers (sorted bam)'} = $f;} + elsif ( $f =~ /transcripts_reads_counts\.txt$/) { $Hex{'read number per exon (txt)'} = $f;} elsif ( $f =~ /TEs_reads_counts\.txt$/) { $HTE{"read number per TE 0 to $misTE mismatches (txt)"} = $f; } elsif ( $f =~ /TEs_reads_counts_mismatches\.txt$/) { $HTE{"read number per TE with 1 to $misTE mismatches (txt)"} = $f; } elsif ( $f =~ /TEs_reads_counts_nomismatches\.txt$/) { $HTE{'read number per TE with no mismatch (txt)'} = $f; } @@ -746,11 +746,11 @@ { my ($dir, $name) = @_; my (@out,@group); - my $group = $dir.'/'.$name.'-subgroups-bonafide_reads-exons-*distribution-*.png'; + my $group = $dir.'/'.$name.'-subgroups-bonafide_reads-transcripts-*distribution-*.png'; @group = glob $group; foreach (my $g =0; $g <= $#group; $g++) { - if ($group[$g] =~ /.*($name-subgroups-bonafide_reads-exons-.*distribution-.*\.png)/ ) + if ($group[$g] =~ /.*($name-subgroups-bonafide_reads-transcripts-.*distribution-.*\.png)/ ) { my $tmp = $1; push @out, $1; |