| Previous changeset 2:82fb5e3bb93e (2021-04-07) |
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Commit message:
"planemo upload commit 6e869b3e13ed7b012b270f14fce812613642e5f2" |
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modified:
breseq.xml macros.xml test-data/gdout.txt test-data/gdtoolsout.html test-data/lambda.short_sequence_repeats.fastq test-data/lambda.short_sequence_repeats.fastq.gz test-data/log.txt test-data/report.html |
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removed:
test-data/out.tar.gz |
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| diff -r 82fb5e3bb93e -r 0d18a3ba2d1c breseq.xml --- a/breseq.xml Wed Apr 07 12:17:45 2021 +0000 +++ b/breseq.xml Mon Apr 04 08:30:52 2022 +0000 |
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| @@ -1,13 +1,14 @@ -<tool id="breseq" name="breseq" version="@PACKAGE_VERSION@+@GALAXY_VERSION@"> - +<tool id="breseq" name="breseq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>find mutations in haploid microbial genomes</description> - + <xrefs> + <xref type="bio.tools">breseq</xref> + </xrefs> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.35.5">breseq</requirement> + <requirement type="package" version="@TOOL_VERSION@">breseq</requirement> <requirement type="package" version="1.32">tar</requirement> </requirements> @@ -142,7 +143,7 @@ <param name="predict_junctions" type="boolean" truevalue="" falsevalue="--no-junction-prediction" checked="true" label="Predict Junctions" help="Predict new sequence junctions (default). --no-junction-prediction is supplied if 'No' is selected. Otherwise, there is no flag." /> <section name="output_options" title="Output Options" expanded="false"> - <param name="formats" type="select" multiple="true" optional="false" display="checkboxes" label="Output Formats"> + <param name="formats" type="select" multiple="true" optional="false" label="Output Formats"> <option value="gd" selected="true">Variants (GenomeDiff)</option> <option value="html">Variant Report (Webpage)</option> <option value="zip">All Variant Results (Gzip)</option> @@ -267,7 +268,7 @@ </repeat> <conditional name="run"> <param name="mode" value="annotate" /> - <param name="gds" value="gdout.txt" /> + <param name="gds" value="gdout.txt" ftype="tabular" /> <section name="output_options"> <param name="formats" value="html" /> </section> |
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| diff -r 82fb5e3bb93e -r 0d18a3ba2d1c macros.xml --- a/macros.xml Wed Apr 07 12:17:45 2021 +0000 +++ b/macros.xml Mon Apr 04 08:30:52 2022 +0000 |
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| @@ -1,9 +1,10 @@ <macros> - <token name="@PACKAGE_VERSION@" >0.35.5</token> - <token name="@GALAXY_VERSION@" >0</token> + <token name="@TOOL_VERSION@">0.35.5</token> + <token name="@VERSION_SUFFIX@">1</token> + <token name="@PROFILE@">20.09</token> <xml name="annotate_format_opts"> <section name="output_options" title="Output Options" expanded="false"> - <param argument="--format" name="formats" type="select" multiple="true" optional="false" display="checkboxes" label="Output Formats" help="Note, this tool will run as many times (serially) as the number of output formats selected."> + <param argument="--format" name="formats" type="select" multiple="true" optional="false" label="Output Formats" help="Note, this tool will run as many times (serially) as the number of output formats selected."> <yield /> <option value="tsv">Annotated Variants (Tabular)</option> <option value="json">Annotated Variants (Json)</option> |
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| diff -r 82fb5e3bb93e -r 0d18a3ba2d1c test-data/gdout.txt --- a/test-data/gdout.txt Wed Apr 07 12:17:45 2021 +0000 +++ b/test-data/gdout.txt Mon Apr 04 08:30:52 2022 +0000 |
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| b'@@ -1,31 +1,489 @@\n #=GENOME_DIFF\t1.0\n #=TITLE\tsmallest\n-#=CREATED\t12:47:14 07 Apr 2021\n+#=CREATED\t09:02:10 11 Oct 2021\n #=PROGRAM\tbreseq 0.35.5 \n-#=COMMAND\tbreseq --num-processors 1 -o results --reference /home/berntm/.planemo/planemo_tmp_c9ga3mbq/test-data/lambda.gbk /tmp/tmpld3eebea/files/8/e/1/dataset_8e1ab48f-6786-4ed7-bf44-beec17749bb3.dat --name 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| diff -r 82fb5e3bb93e -r 0d18a3ba2d1c test-data/gdtoolsout.html --- a/test-data/gdtoolsout.html Wed Apr 07 12:17:45 2021 +0000 +++ b/test-data/gdtoolsout.html Mon Apr 04 08:30:52 2022 +0000 |
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| @@ -85,26 +85,6 @@ <!-- Print The Table Row --> <tr class="normal_table_row"> -<td align="right">41,716</td><!-- Position --> -<td align="center">(T)<sub>5→9</sub></td><!-- Cell Mutation --> -<td align="center">coding (636/873 nt)</td> -<td align="center"><i>NinC</i> →</td> -<td align="left">NinC protein</td> -</tr> -<!-- End Table Row --> - -<!-- Print The Table Row --> -<tr class="normal_table_row"> -<td align="right">44,075</td><!-- Position --> -<td align="center">(CAAA)<sub>2→1</sub></td><!-- Cell Mutation --> -<td align="center">coding (190‑193/624 nt)</td> -<td align="center"><i>Q</i> →</td> -<td align="left">late gene regulator</td> -</tr> -<!-- End Table Row --> - -<!-- Print The Table Row --> -<tr class="normal_table_row"> <td align="right">47,317</td><!-- Position --> <td align="center">N→T</td><!-- Cell Mutation --> <td align="center"><span style="white-space: nowrap"><font class="snp_type_nonsynonymous">?87I</font> (<font class="mutation_in_codon">N</font>TC→<font class="mutation_in_codon">A</font>TC) </span></td> |
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| diff -r 82fb5e3bb93e -r 0d18a3ba2d1c test-data/lambda.short_sequence_repeats.fastq --- a/test-data/lambda.short_sequence_repeats.fastq Wed Apr 07 12:17:45 2021 +0000 +++ b/test-data/lambda.short_sequence_repeats.fastq Mon Apr 04 08:30:52 2022 +0000 |
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| b'@@ -4998,15003 +4998,3 @@\n CAAAGTTACCTGTCAAACGGTGCAATGAAGCTAAGTTAGGACTCGTCAGA\n +\n IHHIIHHGIIIIIIHIIICHIDIICFIIIII>IIIIIIE>II<EIII@A;\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001250\n-TTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGAAA\n-+\n-IHIHIHIFHHHIIHGIHIHIHGHFFIIHEIIIIIGHGDIIIIIEIIHI@F\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001251\n-ACATTGATTCAGGTACAGGGAGAAGGCGCATGAGACTCGAAAGCGTAGCT\n-+\n-IIIIIIHIGHFHIIIGGHICHIIFIEFF?IDIIIGIEIIIICHHIAIIIC\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001252\n-TGCTCATTAATATACTTCTGGGTTCCTTCCAGTTGTTTTTGCATAGGGAT\n-+\n-IIHHGIHIHGHIIFIIEIGFEICGCIIBDGIHIIBIIE?ID@IGDI@IAI\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001253\n-GCGGCTAAAGCCAAAGCCTGGAATCAGATATCTTGCTGAACTGTCGACTT\n-+\n-IHHHHIGIHGHGHEHEHGIGHIFIIIGEFIEHGGCII=IDIIIIIA@IIG\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001254\n-ACCTCCTGCCACCCGCTTTCACGAAGGTCATGTGTAAAAGGCCGCAGCGT\n-+\n-IIIIIHIHIIIHIIGFIHIEIFFHIHGGHDDIBFIGBFEIFIG@DH?III\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001255\n-ACTGGCTGCTTATGGCGGTGGCTGGTTCTTTAATCTCGATTACGACAAAG\n-+\n-HHHIIIIHIGHIIFIIHIGIIFIEIIICDDI:AG@IIIIGIDIHIICIII\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001256\n-GAAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATAT\n-+\n-IHIHHGIIIHIIIIIIGIFIHICFIIEDIIIFIHHIICIIEHBII>BEIB\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001257\n-GGAAGTCTCGTTCCGTATCGCGTCGAACTGATTAGCCGCATCGGGCAGGA\n-+\n-IHHIIHHHIIFGHFIHHEDGIIDGHIEIGIB<GGIIGGEDHIEIAI?IIB\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001258\n-TTACAAATATCCATGAACATAAAAGATATTACTATACCTTTGATAATTCA\n-+\n-HHIIHIIHIIIHDIIEHIIDIFIFIDHIIHHGCIGAIFIGGEEIIIIEI?\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001259\n-AGCGAATGTTGCGAGCACTTGCAGTACCTTTGCCTTAGTATTTCCTTCAA\n-+\n-HHHHIHHIFIGHHIHIIGGFGFGEHGDIC=IICBIIIGIIIH>HFIGIHI\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001260\n-CTTATCTCGGTGGGCGATTTGGTTGATCGTGGTGCAGAGAACGTTGAATG\n-+\n-HHHIHIIFHHIIIIGEIGIIIIIEIEGGHHDIIB@BIIIBII<IIEFHEF\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001261\n-TAGTAAGCGCCGCCTCTTTTCATCTCACTACCACAACGAGCGAATTAACA\n-+\n-IHHIIHHIHIHIFIIIHGHGIIHGGHCIFEI?IIFHFICIEICIIIH?GD\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001262\n-TTTCGAGTTGGGTCCACTTATCGCGGAGTTTGGCCGGGCTCAGCACGTTA\n-+\n-IIIIHHHHIGGIHIIIHIIFEIIEFFIDIFDDEIIGIIIIDEIHIIGDIC\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001263\n-CGAAATAGCAGAAGTGAGGCCGCATGACGTTCTCAGTAAAAACCATTCCA\n-+\n-IHIIIHGIHIIGGIIIHFIHIIIICIDIFIFIEI@I?GIGIEIB<IHEHH\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001264\n-TATAGAAACGTCCTATGATAGGTTGAAATCAAGAGAAATCACATTTCAGC\n-+\n-HIIIHIIIFIEHIIEIIGGFIAIDGIDAIBCIAIIHCIDAFEEID?ID9F\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001265\n-ATACGTCGGCGGCGGCGGCGGCGCGTTCTGCACTGACAGATTAAAACACG\n-+\n-IIHHHHHGGGIGIHFFIIHIEIGEIEHIFHDIIHCIHFIIGII@EI<@I:\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001266\n-CACACACATGTCGCGGTGGTTACGTCCGTCACGTTCACGCATCAGGCGGA\n-+\n-HIIIIGHHGIHIIIFIHIIEEIDFIHHFIIIIFDIIBIIGIIIIIICIIF\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001267\n-TTGAAGGAAATACTAAGGCAAAGGTACTGCAAGTGCTCGCAACATTCGCT\n-+\n-HIIHHIIIIHIIIHHHIEFIEIHEDIII?BDICIIIGBIIIFEIGIIIII\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001268\n-TCTGACGTAAAAACCTTCAACTACACGGCTCACCTGTGGGATATCCGGTG\n-+\n-IIIHHIIHIHGHHIIIEIEGHHFIIIIEAFHIIIIIGFIIIIICIIEIII\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001269\n-CCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATGAATGTATGT\n-+\n-IIIHIHHIIIGHIHDIIIHHGEDCGIIIGGFGFIFIIBHIIIGBIGIIGI\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001270\n-ACACGGAAGAAACCGGACGTTATGATTTAGCGTGGAAAGATTTGTGTAGT\n-+\n-HHHHIHHGIHHHIFGFFFIHIIDDIHBHGIEIHIHEGI?@GHGIIEDB?I\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001271\n-TTTTGAATGCGGTCACACGTTAGCAGCATGATTGCCACGGATGGCAACAT\n-+\n-IIIIHIGHIHIHIHGIIDIFIIIFIGFFGHHIIIHIIF?IIIIIICDII?\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000001272\n-TTCATATTATTATCGTGCTTCACCAACGCTGCCTCAATTGCTCTGAATGC\n-+\n-HIIIIHG'..b'GTAGCCGATAAACACGCTCGTTATATAAGCGAG\n-+\n-IIHIHIIIIIIIIIGFGHIHIFBIIEIFIIDIIFGDIIAEA?BIIAE@I=\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004977\n-GTACAGGCCGTGCGGTTGATATTGCCAAAACAGAGCTGTGGGGGAGAGTT\n-+\n-IHHIIIHHHIHIHGHCHGIFEE=GHGCIIFIFFHIEGBIIHHCHI@HHGI\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004978\n-GAGTGTCCGGGAATAATTAAAACGATGCACACAGGGTTTAGCGCGTACGC\n-+\n-IHHIIIIGGHHGHIHIHIIFIIEHIGIFDBEDFIIIII<BIHH=EIGI<I\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004979\n-ATGTGAGACGTTGTGACGTTTTAGTTCAGAATAAAACAATTCACAGTCTA\n-+\n-HIIHGGIIGGIIIFIEIIIIHIIIHIIHIIDAEGIIHIEIEIIIIIBIBA\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004980\n-CAGGGGAATGTGATTAATTCCAGGCATTAAACGTTCTCTGCACCACGATC\n-+\n-IIHHHHIIHGHGGEGIEIIGGHIIFHIG>IGIFHHFIHFHHI?IGHIGIH\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004981\n-ACGCCGGGGGCAAGATGCAGAGATTGCCATGGTACAGGCCGTGCGGTTGA\n-+\n-HIHIIHIHIIIIIGIIIFIIH@IIGHGIIIIFAIGIIBFIIGABHI>HIG\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004982\n-ACCGTTCCGCCCGCTTCTTTGAATTTTGCAATCAGGCTGTCAGCCTTATG\n-+\n-IHIHHHIHGHHIIIGIHFEGHHHICIBEIDHHIBIFIHIIDIIII9HIII\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004983\n-ACAGGCGCCGGACGCTACCAGCTTCTTTCCCGTTGGTGGGATGCCTACCG\n-+\n-IIIHHHHIIIHIIHIGHIIIGGGDHGIIICFGIIIE@DGIBI8IICGIBI\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004984\n-TTTACACGAATCAGATCCACGGAGGGATCATCAGCAGATTGTTCTTTATT\n-+\n-HIIHHHHHHGHHHIIHIIIEHFIFGHIHEGHHGIGCIIHII9DIIIIBG:\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004985\n-CATGCAGCTTCTGACCGCAGTTAGCGCACGTTAAAGCTCGCTCGACGCTT\n-+\n-HHHHIHIIHHGGIGICIIIGIGIG@DIICIIIICID7GIID@IHIIHI?F\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004986\n-ATCTTCTACTCCGGCTTTTTTAGCAGCGAAGCGTTTGATAAGCGAACCAA\n-+\n-IIHHGHIIIIIIGIGGIIIIIEIHDIIIIIGBIIIIIDIGGICDIIIIID\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004987\n-CTTGCCCCCGGCGTCGCGGCACTACGGCAATAATCCGCATAAGCGAATGT\n-+\n-IIHIHIHHIHGIIHHHFIHHFIDEIGIHFIIDIIIFIIIIIIII@GAI=I\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004988\n-ATGCGCTATTACGAAAAAATTGATGGCAGCAAATACCGAAATATTTGGGT\n-+\n-IIIIIIHIIIHIGIIIIHHGIIEEIIGIFIIIAIIHAIHGHGIGADIIID\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004989\n-CCGGACATTACCGGACAACTGCTGCGGCACCTCAACTCCGATTTAATGTA\n-+\n-HHHHHGIIFIIGFEIHIIIGHHGFIEIFGIHEICICG@EGIAIII?IF1D\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004990\n-GAATAGCGTTTTGCTGATGTGCTGGAGATCGAATTACAAAGGTTAGTTTT\n-+\n-IHIIHIHIIIIGIIIIIIIIIIIIGEIGFFIIIIE<DHIGIEIIEIIFBG\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004991\n-TAACTTCGATTTTGGTCAATCACCTTGTTTTCCTCGCACGACGTCTTAGC\n-+\n-IIHIIIHIHIHIIIIHHIHDHGIIFGGHIIIIHGEFIIGIIACIIFHCII\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004992\n-GGATATTCAGACGCGAATGCCTGTTCTGAAGCCATTTATCGATATGGTAA\n-+\n-IHIIHIHIHIHIIHIHHFEIIIIFFIIIHEDIEF@FIDIHF?DH@ABI?>\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004993\n-TTTGTTGAGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATT\n-+\n-HIHIIHHHIIIGHGIIFIIIIIIIIFIIIFFIIIIFIIIIIHIIIIIEI9\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004994\n-CCCGCTTTCACGAAGGTCATGTGTAAAAGGCCGCAGCGTGACTATTACTA\n-+\n-IIHIIGIGIHGGHEHIIIIIHIGFIIIGIBEGIIGIIFI>IADHDIHIIG\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004995\n-GGTGCAATGCCACAAAGAAGAGTCAATCGCAGACAACATTTTGAATGCGG\n-+\n-HIHHHHGHHHHHGGGHGIHFIGEDFIHEIGF@GDIGHEIFGIIIDFIIDB\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004996\n-ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT\n-+\n-HIHHIIHGGHIHIIGEHIIIGEFGDIHGIIFFHGCGIIHIBDIIAIIFBD\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004997\n-AAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGAACCTGATGA\n-+\n-IIIIIIHHHGHGHIHHIHCIHDIEFIIEICIIAIIA@IICGIFII>CCIC\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004998\n-CGTCACCTAAGCAGGCCCATAGCTTCCTGTTTTGGTCTAAGCTGCGGTTG\n-+\n-HIHHHIHGHHGGGIGHIFIHHIIIHIIIIHDIIHFBIIHDIIGI>IFDIG\n-@../data/lambda/lambda.short_sequence_repeats.fastq.000004999\n-ATAATATTCACATCGTGTTAGAAAACGATAACACCGTGTTAATAAAAGGA\n-+\n-IHIHIHIGIGIIGGIFHDHHFIFHDFBCGCCEDIIIIIIFIFIICIIDHI\n' |
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| diff -r 82fb5e3bb93e -r 0d18a3ba2d1c test-data/log.txt --- a/test-data/log.txt Wed Apr 07 12:17:45 2021 +0000 +++ b/test-data/log.txt Mon Apr 04 08:30:52 2022 +0000 |
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| @@ -1,4 +1,4 @@ -Wed Apr 7 12:46:45 2021 +Mon Oct 11 09:01:41 2021 -breseq --num-processors 1 -o results --reference /tmp/tmpld3eebea/files/3/b/d/dataset_3bd49447-677c-47c9-af83-1faa6f250e8b.dat /tmp/tmpld3eebea/files/e/5/8/dataset_e5864299-c116-4b7a-99b8-a39bd2f2c727.dat --name smallest +breseq --num-processors 1 -o results --reference /tmp/tmpxwfwo8j7/files/0/3/b/dataset_03b8d8f8-fd35-40d7-a83d-cf2385389e36.dat /tmp/tmpxwfwo8j7/files/5/6/5/dataset_565ec47f-ddef-4225-879c-5c89f4ff2192.dat --name smallest |
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| diff -r 82fb5e3bb93e -r 0d18a3ba2d1c test-data/report.html --- a/test-data/report.html Wed Apr 07 12:17:45 2021 +0000 +++ b/test-data/report.html Mon Apr 04 08:30:52 2022 +0000 |
| [ |
| @@ -81,7 +81,7 @@ <!-- Print The Table Row --> <tr class="normal_table_row"> -<td align="center"><a href="evidence/JC_11.html">JC</a></td><!-- Evidence --> +<td align="center"><a href="evidence/JC_9.html">JC</a></td><!-- Evidence --> <td align="right">41,405</td><!-- Position --> <td align="center">(GCG)<sub>2→5</sub></td><!-- Cell Mutation --> <td align="center">coding (325/873 nt)</td> @@ -92,7 +92,7 @@ <!-- Print The Table Row --> <tr class="normal_table_row"> -<td align="center"><a href="evidence/MC_PLOT_8.html">MC</a> <a href="evidence/JC_12.html">JC</a></td><!-- Evidence --> +<td align="center"><a href="evidence/MC_PLOT_6.html">MC</a> <a href="evidence/JC_10.html">JC</a></td><!-- Evidence --> <td align="right">41,601</td><!-- Position --> <td align="center">(AAC)<sub>2→1</sub></td><!-- Cell Mutation --> <td align="center">coding (521‑523/873 nt)</td> @@ -103,29 +103,7 @@ <!-- Print The Table Row --> <tr class="normal_table_row"> -<td align="center"><a href="evidence/JC_13.html">JC</a></td><!-- Evidence --> -<td align="right">41,716</td><!-- Position --> -<td align="center">(T)<sub>5→9</sub></td><!-- Cell Mutation --> -<td align="center">coding (636/873 nt)</td> -<td align="center"><i>NinC</i> →</td> -<td align="left">NinC protein</td> -</tr> -<!-- End Table Row --> - -<!-- Print The Table Row --> -<tr class="normal_table_row"> -<td align="center"><a href="evidence/MC_PLOT_9.html">MC</a> <a href="evidence/JC_14.html">JC</a></td><!-- Evidence --> -<td align="right">44,075</td><!-- Position --> -<td align="center">(CAAA)<sub>2→1</sub></td><!-- Cell Mutation --> -<td align="center">coding (190‑193/624 nt)</td> -<td align="center"><i>Q</i> →</td> -<td align="left">late gene regulator</td> -</tr> -<!-- End Table Row --> - -<!-- Print The Table Row --> -<tr class="normal_table_row"> -<td align="center"><a href="evidence/SNP_5.html">RA</a></td><!-- Evidence --> +<td align="center"><a href="evidence/SNP_3.html">RA</a></td><!-- Evidence --> <td align="right">47,317</td><!-- Position --> <td align="center">N→T</td><!-- Cell Mutation --> <td align="center"><span style="white-space: nowrap"><font class="snp_type_nonsynonymous">?87I</font> (<font class="mutation_in_codon">N</font>TC→<font class="mutation_in_codon">A</font>TC) </span></td> @@ -147,27 +125,40 @@ <th width="100%">description</th> </tr> <tr> +<td><a href="evidence/MC_SIDE_1_5.html">*</a></td> +<td><a href="evidence/MC_SIDE_2_5.html">*</a></td> +<td><a href="evidence/MC_PLOT_5.html">÷</a></td> +<td>NC_001416</td> +<td align="right">1</td> +<td align="right">38811</td> +<td align="right">38811</td> +<td align="center">NA [0]</td> +<td align="center">[1] 2</td> +<td align="center"><i>nu1–[O]</i></td> +<td align="left">nu1,A,W,B,C,nu3,D,E,Fi,Fii,Z,U,V,G,T,H,M,L,K,I,J,lom,orf‑401,orf206b,orf‑314,orf‑194,ea47,ea31,ea59,int,xis,lambdap35,ea8.5,ea22,orf61,orf63,orf60a,exo,bet,gam,kil,cIII,ea10,ral,orf28,lambdap48,N,rexb,rexa,cI,cro,cII,[O]</td> +</tr> +<tr> <td><a href="evidence/MC_SIDE_1_7.html">*</a></td> <td><a href="evidence/MC_SIDE_2_7.html">*</a></td> <td><a href="evidence/MC_PLOT_7.html">÷</a></td> <td>NC_001416</td> -<td align="right">1</td> -<td align="right">38810</td> -<td align="right">38810</td> -<td align="center">NA [0]</td> -<td align="center">[10] 13</td> -<td align="center"><i>nu1–[O]</i></td> -<td align="left">nu1,A,W,B,C,nu3,D,E,Fi,Fii,Z,U,V,G,T,H,M,L,K,I,J,lom,orf‑401,orf206b,orf‑314,orf‑194,ea47,ea31,ea59,int,xis,lambdap35,ea8.5,ea22,orf61,orf63,orf60a,exo,bet,gam,kil,cIII,ea10,ral,orf28,lambdap48,N,rexb,rexa,cI,cro,cII,[O]</td> +<td align="right">48305</td> +<td align="right">48312</td> +<td align="right">8</td> +<td align="center">2 [1]</td> +<td align="center">[1] 2</td> +<td align="center"><i>lambdap79/–</i></td> +<td align="left">hypothetical protein/–</td> </tr> <tr> -<td><a href="evidence/MC_SIDE_1_10.html">*</a></td> -<td><a href="evidence/MC_SIDE_2_10.html">*</a></td> -<td><a href="evidence/MC_PLOT_10.html">÷</a></td> +<td><a href="evidence/MC_SIDE_1_8.html">*</a></td> +<td><a href="evidence/MC_SIDE_2_8.html">*</a></td> +<td><a href="evidence/MC_PLOT_8.html">÷</a></td> <td>NC_001416</td> -<td align="right">48475</td> +<td align="right">48485</td> <td align="right">48502</td> -<td align="right">28</td> -<td align="center">12 [10]</td> +<td align="right">18</td> +<td align="center">2 [1]</td> <td align="center">[0] NA</td> <td align="center"><i>lambdap79/–</i></td> <td align="left">hypothetical protein/–</td> |