Previous changeset 1:98944ec4bfc7 (2022-03-25) Next changeset 3:4769baf47b8d (2023-10-19) |
Commit message:
"planemo upload for repository https://github.com/inab/trimal commit 0f93f327c49e93d6af057973d68ba772ba5715dc-dirty" |
modified:
trimal.xml |
b |
diff -r 98944ec4bfc7 -r 0d53577b962f trimal.xml --- a/trimal.xml Fri Mar 25 17:35:43 2022 +0000 +++ b/trimal.xml Mon Apr 11 13:07:11 2022 +0000 |
b |
@@ -15,7 +15,7 @@ ]]></command> <inputs> - <param name="input1" type="data" format="fasta,clustal,pir,phylip,nexus" multiple="false" label="Alignment file (clustal, fasta, NBRF/PIR, nexus, phylip3.2, phylip)" optional="false" /> + <param name="input1" type="data" format="fasta,clustal,pir,phylip,nexus,mega" multiple="false" label="Alignment file (clustal, fasta, NBRF/PIR, nexus, phylip3.2, phylip)" optional="false" /> <conditional name="trimming_mode"> <param name="mode_selector" type="select" label="Select trimming mode from the list"> <option value="-nogaps">nogaps. Remove all positions with gaps in the alignment.</option> @@ -48,7 +48,22 @@ </param> </inputs> <outputs> - <data name="trimmed_output" format="fasta" label="Trimmed alignment."/> + <data name="trimmed_output" format="fasta" label="Trimmed alignment."> + <change_format> + <when input="out_format_selector" value="-fasta" format="fasta" /> + <when input="out_format_selector" value="-fasta_m10" format="fasta" /> + <when input="out_format_selector" value="-phylip" format="phylip" /> + <when input="out_format_selector" value="-phylip_m10" format="phylip" /> + <when input="out_format_selector" value="-phylip_paml" format="phylip" /> + <when input="out_format_selector" value="-phylip_paml_m10" format="phylip" /> + <when input="out_format_selector" value="-phylip3.2" format="phylip" /> + <when input="out_format_selector" value="-phylip3.2_m10" format="phylip" /> + <when input="out_format_selector" value="-clustal" format="clustal" /> + <when input="out_format_selector" value="-mega" format="mega" /> + <when input="out_format_selector" value="-nbrf" format="pir" /> + <when input="out_format_selector" value="-nexus" format="nexus" /> + </change_format> + </data> <data name="html_summary" format="html" label="trimal html summary."/> </outputs> <tests> |