Previous changeset 0:e93e32359b67 (2021-11-15) Next changeset 2:7776cb18fdf8 (2022-02-01) |
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_interproscan commit 7fbeae66de8617e525cd968a2ef89b0be448a618" |
modified:
data_manager/interproscan.py data_manager/interproscan.xml |
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diff -r e93e32359b67 -r 0db4f153d86d data_manager/interproscan.py --- a/data_manager/interproscan.py Mon Nov 15 17:21:22 2021 +0000 +++ b/data_manager/interproscan.py Wed Nov 17 19:16:17 2021 +0000 |
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@@ -97,7 +97,15 @@ download_file(DATA_URL.format(version=tag), dest_tar) print("Finished, now checking md5...") - md5_computed = hashlib.md5(open(dest_tar, 'rb').read()).hexdigest() + m = hashlib.md5() + blocksize = 2**20 + with open(dest_tar, 'rb') as tarball: + while True: + buf = tarball.read(blocksize) + if not buf: + break + m.update(buf) + md5_computed = m.hexdigest() if not md5.startswith(md5_computed): raise RuntimeError("MD5 check failed: computed '%s', expected '%s'" % (md5_computed, md5)) @@ -111,7 +119,7 @@ shutil.move(os.path.join(output_directory, 'interproscan-%s' % tag, 'core/jms-implementation/support-mini-x86-32/data/'), os.path.join(output_directory, 'data')) else: print("Moving data files around...") - shutil.move(os.path.join(output_directory, 'interproscan-%s' % tag), os.path.join(output_directory, 'data')) + shutil.move(os.path.join(output_directory, 'interproscan-%s' % tag, 'data'), os.path.join(output_directory, 'data')) print("Done, removing tarball and unneeded files...") os.remove(dest_tar) |
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diff -r e93e32359b67 -r 0db4f153d86d data_manager/interproscan.xml --- a/data_manager/interproscan.xml Mon Nov 15 17:21:22 2021 +0000 +++ b/data_manager/interproscan.xml Wed Nov 17 19:16:17 2021 +0000 |
[ |
@@ -4,7 +4,7 @@ <requirement type="package" version="2.26.0">requests</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ -python '$__tool_directory__/interproscan.py' +python -u '$__tool_directory__/interproscan.py' $partial_data --version '$version' 'interproscan' |