Repository 'deeptools_bam_coverage'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage

Changeset 24:0e143b4c3987 (2019-04-02)
Previous changeset 23:fe7cc56090ea (2019-02-20) Next changeset 25:7a7fd0f5f15d (2019-05-29)
Commit message:
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 6f68c67a609ee0ee720f7c6e197fe37ecd940b57
modified:
deepTools_macros.xml
b
diff -r fe7cc56090ea -r 0e143b4c3987 deepTools_macros.xml
--- a/deepTools_macros.xml Wed Feb 20 08:04:46 2019 -0500
+++ b/deepTools_macros.xml Tue Apr 02 08:19:06 2019 -0400
b
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.2.0.0</token>
+    <token name="@WRAPPER_VERSION@">3.2.1.0</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.2.0">deeptools</requirement>
+            <requirement type="package" version="3.2.1">deeptools</requirement>
             <requirement type="package" version="1.9">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -650,6 +650,14 @@
                  (default: False)" />
     </xml>
 
+    <xml name="skipZeroOverZero">
+        <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage"
+            help="Skip bins where BOTH files lack coverage.">
+            <option value="" selected="true">No</option>
+            <option value="--skipZeroOverZero">Yes, skip them.</option>
+        </param>
+    </xml>
+
     <xml name="exactScaling">
         <param argument="--exactScaling" type="boolean" truevalue="--exactScaling" falsevalue="" checked="False"
             label="Compute an exact scaling factor"