Repository 'chado_feature_load_fasta'
hg clone https://toolshed.g2.bx.psu.edu/repos/gga/chado_feature_load_fasta

Changeset 6:0e2c2d7d080f (2018-09-04)
Previous changeset 5:5b482826e065 (2018-08-31) Next changeset 7:c768f590d1d8 (2018-11-05)
Commit message:
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit a1460ea4dbbd5c6ff6576b2d6db8aaa04b0061a7
modified:
feature_load_fasta.xml
b
diff -r 5b482826e065 -r 0e2c2d7d080f feature_load_fasta.xml
--- a/feature_load_fasta.xml Fri Aug 31 02:59:35 2018 -0400
+++ b/feature_load_fasta.xml Tue Sep 04 12:21:09 2018 -0400
b
@@ -25,11 +25,10 @@
 #if $re_uniquename:
   --re_uniquename '$re_uniquename'
 #end if
-#if $match_on_name:
-  $match_on_name
-#end if
 
-$update
+$match_on_name
+
+$do_update
 
 #if $ext_db.db:
   --db '${ext_db.db}'
@@ -64,7 +63,7 @@
  <param name="re_name" label="Name regular expression" argument="re_name" type="text" help="Regular expression to extract the feature name from the fasta sequence id (first capturing group will be used)." optional="true" />
  <param name="re_uniquename" label="Uniquename regular expression" argument="re_uniquename" type="text" help="Regular expression to extract the feature name from the fasta sequence id (first capturing group will be used)." optional="true" />
  <param name="match_on_name" label="Match on name" argument="match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match existing features using their name instead of their uniquename" />
- <param name="update" label="Update" argument="update" type="boolean" truevalue="--update" falsevalue="" help="Update existing feature with new sequence instead of throwing an error" />
+ <param name="do_update" label="Update" argument="update" type="boolean" truevalue="--update" falsevalue="" help="Update existing feature with new sequence instead of throwing an error" />
      <conditional name="relationships">
  <param name="rel_type"
     argument="--rel_type"